Clone Read LE_HBa0123P03_T7_58709

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0123P03_T7_58709
Primer
T7
ID from Seq. Facility
LE_HBa_123_P03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
748 trimmed for vector and quality, 887 raw
Sequence
>LE_HBa0123P03_T7_58709 (raw untrimmed)
TACTAACCGGGTACCGAGGAGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTAATTATACCCAATCATCTACTTTGAACTCCAACATATTTCTTCTA
ACATATGTATAGGATTCTTAACGATTCTATGCCGTTTTCATTCTCTCTTGAATTACCTTCACCTTCTCCATAGCTTGGTGAGCTTGACACTGTCCTATCA
ACCCTGCTTCACAAACATTGAACCACCTAATATAATATTTGTATCTTCTCCCATAAAGAGCTTCGTATGGAGCCATTTGAATGCTCAAATGGTAGTTGTT
GTTGTAAACAAACTCAATGAGAGGTAGGTGGTCATCCCAATTCCCCTTTAAAGCAATCACGCAATCCCTCAGCATATATTCTGAAGTCTGTATAGTACAT
GTTGCTTGACCATATGTCTGAGGATGAAAGTAGTGCTTAAGTTCACTTTGAACCCAAACCATTCTAGAAAAATTTCCAGACTGTGTAGTACATTGTACAC
CTCTATCTGAAATGATCGAAATCGGGACTCCATGAAGTCTCACCACTTGCTGAATGTACAACATTGCATAATCCTCTATCGAATGAGTGGTATTTACCAG
TAGAAAGTGGGCTGATTTTGTCATTCTATCGACAATCACCCAAATTGAATTATGATGCCTTAGATCAGAGACCTTGGAAACCCTGTGATGAATTTCATAT
AATCATCTCCCCACTTTTCATTTCCGAAGTTTTATATTCGCAGCAAACCCCTCAACCCCTTGGTGTTCTACTTTGATTTTTGGGCGATTCAACACTTGGA
AGCAAATGAACAATGCCCTTCTTATACCTTCCCACAATATACCCCTCTCAAACTTCTTTTGGGAACCCGATAATTTGAAAATTGGAT
>LE_HBa0123P03_T7_58709 (trimmed for quality and cloning vector)
AGCTTTAATTATACCCAATCATCTACTTTGAACTCCAACATATTTCTTCTAACATATGTATAGGATTCTTAACGATTCTATGCCGTTTTCATTCTCTCTT
GAATTACCTTCACCTTCTCCATAGCTTGGTGAGCTTGACACTGTCCTATCAACCCTGCTTCACAAACATTGAACCACCTAATATAATATTTGTATCTTCT
CCCATAAAGAGCTTCGTATGGAGCCATTTGAATGCTCAAATGGTAGTTGTTGTTGTAAACAAACTCAATGAGAGGTAGGTGGTCATCCCAATTCCCCTTT
AAAGCAATCACGCAATCCCTCAGCATATATTCTGAAGTCTGTATAGTACATGTTGCTTGACCATATGTCTGAGGATGAAAGTAGTGCTTAAGTTCACTTT
GAACCCAAACCATTCTAGAAAAATTTCCAGACTGTGTAGTACATTGTACACCTCTATCTGAAATGATCGAAATCGGGACTCCATGAAGTCTCACCACTTG
CTGAATGTACAACATTGCATAATCCTCTATCGAATGAGTGGTATTTACCAGTAGAAAGTGGGCTGATTTTGTCATTCTATCGACAATCACCCAAATTGAA
TTATGATGCCTTAGATCAGAGACCTTGGAAACCCTGTGATGAATTTCATATAATCATCTCCCCACTTTTCATTTCCGAAGTTTTATATTCGCAGCAAACC
CCTCAACCCCTTGGTGTTCTACTTTGATTTTTGGGCGATTCAACACTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.95898
Expected error %
1.0136
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 278 E Value 1e-73 Identity 21.00% Align. Length 737bp (98.53%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 278 E Value 1e-73 Identity 21.00% Align. Length 737bp (98.53%) Frame 1
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0123P03
Clone
Clone name
hba-123p3
LE_HBa0123P03
P123P03
Clone type
BAC
Contamination
none
Estimated length
71,329
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found