Clone Read LE_HBa0039A10_SP6_61842

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0039A10_SP6_61842
Primer
SP6
ID from Seq. Facility
LE_HBa_039_A10-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 908 raw
Sequence
>LE_HBa0039A10_SP6_61842 (raw untrimmed)
TAAGAGAAGAGAAGGAGGATAGTGATAGGAGAGGAGAAGAGAGAAAGAAGAGAGAAGAGAAAAGAGAATGAATTAATGAAAAGGATTCAACAGATAAANA
GTAGATAAAGAAGCAGGGAGAACCCTTAAAAAATGAAGATGAAAAATATTATTGGTAGTTGATGTTGAGTTTGAATAAGGGAAAGATATTAAAAAGGAGT
AATATAAATATTTAATAATTATTATACCCGTTGTTTTTATTTTTTCTGTAAATATTATTGTGTGAAATAGAGAAATGGNGAT
AAATATTAGTAGATATAG
ATTAATGAAAATTAAAATGTGAATATATATGTATATATGGGGGAATGCACATGGAGAAGTATNGATTAGATAACGACATGANGAGGAATGAATCAGGACC
TAGAAAGAGAACATCGTAGTGATCTAACTAAATAAAGGCACAANTAGAAGAGAGTGAAGAAGAGAAAGGAAAGACAGACTAAAGACAAAAAGAACTACAT
GAAAGAGGAGTAATGAAAGAAGTAAATATATAAATATCAGATAGAACAAAGGAGATATAAAAGAAGAAGGGATGAAACAGAGATAAGAGAGTACACAGTC
ATGTATGTGTAGCAGTTAATGTGTAAGGTAAGAATAAATNGCGCACGAATACGAGTACATAAGGAGCAACACANAGAAATATGAAGTACGAAATAGGAGT
ATGAANCGAGATAGAAAAAAAGAATATGTGAATATATACATGGATGAGATTAATAAGACTAGAAGATCGCAAGGGCATATTAGATTATGATACTAGATAC
TGAATAAATAACAAATATAATAGGATAAAGTACCATAGCGATATAAAGAATAAATATAATAAAATATATGATTAATAAAAGTATATTCCGACAATAACCA
TATACTAC
>LE_HBa0039A10_SP6_61842 (trimmed for quality and cloning vector)
AA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.82141
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0039A10
Clone
Clone name
hba-39a10
LE_HBa0039A10
P039A10
Clone type
BAC
Contamination
none
Estimated length
136,450
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found