Clone Read LE_HBa0039A10_T7_61843

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0039A10_T7_61843
Primer
T7
ID from Seq. Facility
LE_HBa_039_A10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 1414 raw
Sequence
>LE_HBa0039A10_T7_61843 (raw untrimmed)
NTGTGGGAGCTCGTGTGGATGCGAGATGCNTGCGTATCTCATGTNTCTGTTGAGTNANATCGTAGTACGTCTCNTAGCTGCGCTGTCANANGTTNAGTAT
ACGTGACGGGTATGCACGCTATATATCTGCTACACGCATATGTGGTCTANATGACGCACTACATTTTCNGANCAGTATANTGATNATTTCTGATGNCGAT
GCATATCGTCTATTATCAGTCATACATACTGTTCCCTTACGACGTCGCTCNATTGNGCTACGACANCGTANATATCACNTCACACANACCNANTCACTTC
GNCGACATNACGATACAGATACACACAGATCTACAGAACTNAGAGGAACGACACANAGAGAANTAAGACATGTGANTGTCTGTCNGTGTGTANACAGTCA
NTNANTCAGCGACAATAGCANCAGCAGACAAACACCATATGCTGCCATNGACCGTCTACTCACTNACTCNTATATATGACANGATACGATACATACTCNA
TGTGCNAGTGCTGACGTGTATACGAGCGATACATANCAGAATCCATGGCACATGACGATCATAGATGGACGCGANTNACAAGCTTGCAACTAGATANAAT
AGGNCTAGTNCATGACGATTATCAGTCGCCAATACGCCATGNAGCCTCGGTACGCGTNAANTNGCGTGAGAGGCCGCTGAGCATCACAGCTGTAATNCAT
CTGCTNAACANCATCATAGTGAGAGGACTCAACGTTATGCTACTTACACANTCGACGACATTAGTGTATATCCGACACATGCGTCAGCGNAGTCTACCAT
GTCATGATTACTCTAATTAGCATNGTGTNTATGTAGAGGTGTCTCNTGTCNATGAGATACTACTTATGGAATTCTATTCAATGATNGAACGTGTCGTTGA
TCAGNCATGAATTCGTGNGTATGTCTNTATGTTGTGCGTCGTCGCTCGATATGTGATGAGCATACTACGCNCTCATAGCTGCTACATATCATATATATCT
CTCCNCTACATGTATGTGTCTGACAGCATACAATATGATGCAAACTNANCACTCTATCATTATCTACGATATGTGACGCTGCTATCGTGACGGGAATNGA
GATCTCACNCACGTGACACNCTCTCATACCNCTTCAGAGCGGAGNGATCATCCGGTAGTGNGCGCATGGTCCGATCATATAGCGCTGTTCGCTGTGTACT
TCGTCGGCCCTNTACTCACAGGTACTGTAGCATCTGTGTNGNAGCGTACTGATGCAATCGGNGATTGACGCTANCTATAACAGGACTGGAATGATACTCC
TGACGCGTCGCNGCATGTTACGTTCTGTGGACAAGTAGTGTANTNATACGCGCGCGTGCGTCGACTCCGGCTTNACGAGTACATGCGTNTGCTGAGTGNG
CGCTNCTCAGANGN
>LE_HBa0039A10_T7_61843 (trimmed for quality and cloning vector)
TATA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.852071
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0039A10
Clone
Clone name
hba-39a10
LE_HBa0039A10
P039A10
Clone type
BAC
Contamination
none
Estimated length
136,450
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found