Clone Read LE_HBa0042A09_SP6_62608

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0042A09_SP6_62608
Primer
SP6
ID from Seq. Facility
LE_HBa_042_A09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
489 trimmed for vector and quality, 829 raw
Genbank Accession
DU072238
Sequence
>LE_HBa0042A09_SP6_62608 (raw untrimmed)
GCATCTCCTTCCCTATTTTTAATATTTTGTACTAATCACATTTTTTAAAATGAAAATGAGAGAGTTAATTACCTTGCTACGCCTCTATATTTTGATACAC
CTCTTGAAAACCCACTACTTTTTCTGCAAATATATGATAAAAAGTAATATTTACAAAAATTTAATGAAGTAAAAATATGAAGATGAGAATTAATCATACA
TGTACCTTCTCAAAGAACCAATATATTCTTCTTTTGATTGACCTTCCATTTCCTTTAGCTCATTTTCGTACGTCATAATCTATATTAACGAATTTAAAAT
TTAAAATTTATAAATATTTAAAATAATCTCAAGTTAATATATAATAATAAATAAGTCCGAATCAAAATTACTGGGAAATTAAGCATGGTGTCTTGACCCC
AATACTTTAACGCAGCTAAGTCATATGCATGTGCAGCTGCTTCTTCATCATCATAGGCTCCTGCAAAAAAAAAAAAAAAAAAAAATCTCAGTTCTATGGA
TAAAATTTCATTTTACTAATGGCAATATAATGTTGATTAATAAATTGGCGAGCTCAAATAATTGATAATGAAATGCTTTATGGAGTAATATAATATGGGG
AAAAAAATAAAATTAATTCCGAAAAAAGATAATAATCTTCCCCAAATGAACCGTCTTTTCTACTCGAATTTTTGTTAATTCCATGATTTCGGCCCGTCGT
ATCTTTTTTTAATTTTTAATTCATTAAGTTTTTTTCCTACACTCCTACTCAAATATGAATTGGAATTTATTCCAAAAAAAAAAAAAAAATTTATTTCCTA
AATCCTTTCTTCCTTCTTTTGGTGCCTTT
>LE_HBa0042A09_SP6_62608 (trimmed for quality and cloning vector)
ATATTTTGTACTAATCACATTTTTTAAAATGAAAATGAGAGAGTTAATTACCTTGCTACGCCTCTATATTTTGATACACCTCTTGAAAACCCACTACTTT
TTCTGCAAATATATGATAAAAAGTAATATTTACAAAAATTTAATGAAGTAAAAATATGAAGATGAGAATTAATCATACATGTACCTTCTCAAAGAACCAA
TATATTCTTCTTTTGATTGACCTTCCATTTCCTTTAGCTCATTTTCGTACGTCATAATCTATATTAACGAATTTAAAATTTAAAATTTATAAATATTTAA
AATAATCTCAAGTTAATATATAATAATAAATAAGTCCGAATCAAAATTACTGGGAAATTAAGCATGGTGTCTTGACCCCAATACTTTAACGCAGCTAAGT
CATATGCATGTGCAGCTGCTTCTTCATCATCATAGGCTCCTGCAAAAAAAAAAAAAAAAAAAAATCTCAGTTCTATGGATAAAATTTCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.906216
Expected error %
0.222614
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_482634.1| Score 45 E Value 1e-11 Identity 74.30% Align. Length 329bp (67.28%) Frame 1
AP2/EREBP transcription factor-like protein [Oryza sativa (japonica cultivar-group)] dbj|BAD10030.1| AP2/EREBP transcription factor-like protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0042A09
Clone
Clone name
hba-42a9
LE_HBa0042A09
C03HBa0042A09
P042A09
Clone type
BAC
Contamination
none
Estimated length
90,740
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found