Clone Read LE_HBa0042A09_T7_62609

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0042A09_T7_62609
Primer
T7
ID from Seq. Facility
LE_HBa_042_A09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
448 trimmed for vector and quality, 613 raw
Genbank Accession
DU072239
Sequence
>LE_HBa0042A09_T7_62609 (raw untrimmed)
CGGCCATGGGGCATCGCAATGCTTCGTCTAATATAGGGGTATTTATAGATAGAAATTTTTCAGTAACCTATTCATGCTGCTTAAAACATGAACATTATAA
AACAACCAAAATTTCTATTTGCAACTCCTCCTGTTTCTCTTTTCATGTTACAGCACAATCTGAGAAGTCATGCTCTTGATCCACATTGCTAGAATATCAA
TTAAGGTTTTAATTAAATGAGCTTTTTCTTGAAGTCTGTATAAAATATTTTGATGCGGAATGCAAAACTTGGCCACTGTAATAGGTAGTTTCACTTTCGA
TACTTTGATTTGACAGAATAACTGAATATAAGATCTTCAGCTGTATTACAGGTCAACATCACGTGAGTTACGTAGATTAGACAGTGTATCTCGATCACCT
ATATATGCATCTTTTACAGAGACTCTGGATGGATCATCAACAATAAGAGGCTTTAAGAGCGAGGTAATTATATCCTGTTGTTTAAATTAAACTTCCCTCT
CCCAGGAGCATCTTCGTCTTTTCTTTCTCGAGGATATAAATTTTTATACCTGCTTAACAAGAGCTTGTTCTTGCGCTTATCCATATGTGCCTATTGAAAC
ACACCTCGACTCT
>LE_HBa0042A09_T7_62609 (trimmed for quality and cloning vector)
GTATTTATAGATAGAAATTTTTCAGTAACCTATTCATGCTGCTTAAAACATGAACATTATAAAACAACCAAAATTTCTATTTGCAACTCCTCCTGTTTCT
CTTTTCATGTTACAGCACAATCTGAGAAGTCATGCTCTTGATCCACATTGCTAGAATATCAATTAAGGTTTTAATTAAATGAGCTTTTTCTTGAAGTCTG
TATAAAATATTTTGATGCGGAATGCAAAACTTGGCCACTGTAATAGGTAGTTTCACTTTCGATACTTTGATTTGACAGAATAACTGAATATAAGATCTTC
AGCTGTATTACAGGTCAACATCACGTGAGTTACGTAGATTAGACAGTGTATCTCGATCACCTATATATGCATCTTTTACAGAGACTCTGGATGGATCATC
AACAATAAGAGGCTTTAAGAGCGAGGTAATTATATCCTGTTGTTTAAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.94511
Expected error %
0.782383
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g07680.1 Score 81 E Value 3e-16 Identity 31.00% Align. Length 128bp (28.57%) Frame 1
68415.m00992 ABC transporter family protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_178811.3| Score 81 E Value 1e-14 Identity 31.00% Align. Length 128bp (28.57%) Frame 1
ABC transporter family protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD37023.1| Score 81 E Value 1e-14 Identity 31.00% Align. Length 128bp (28.57%) Frame 1
putative ABC transporter [Arabidopsis thaliana] pir||F84487 probable ABC transporter [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0042A09
Clone
Clone name
hba-42a9
LE_HBa0042A09
C03HBa0042A09
P042A09
Clone type
BAC
Contamination
none
Estimated length
90,740
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found