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Clone Read LE_HBa0130P08_SP6_64862

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0130P08_SP6_64862
Primer
SP6
ID from Seq. Facility
LE_HBa_130_P08-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
32 trimmed for vector and quality, 896 raw
Sequence
>LE_HBa0130P08_SP6_64862 (raw untrimmed)
CTAAAAACCGGATGGAGGGTAAATCGGAGACGGGAGGTAGTTCGGGCGTAGGGTTGGGTTAGGGGGCGACCTGAGCCCCTTGAAAGGGGATGGGGAATCG
ACGTATATTGAGAAGGAGCCCTCTTCCTTCTTGTCATATTCTTTATCTCCTAATACATCTTTTGACATATTTCCTGCAAAACAAAAAGAAAATTATATAA
AAATTATCACAAGAACACT
TTTGGACACACTAAACTTAAGGAAAAACTATTAATAATACCGTGGAACCAAGGTATATCAATACCCTCAACTTAAATTCGT
TGTTTAGTCCTCAAGCGACTCTCTTTTTTGTTTTTTTGTGTCTTTGTTTTTTTGTGGTTTGTGTTGCTTCTGTGTTGGTTTTTGTCTGAGTCGACACAGA
TAATTACTTGAGATCATGTTTGATACGCCTCTGAAACACAGTTAGCGATGGAACATATCTTAAAATTAATTTAATTTTCCTTCGTGTATTGTTGTTTTAG
TTGTCGAAAAAGCATATGAATGTATAAGAGGGGATAAATGGAGATCCTAGATGAGTTTCGTCATGCTTCTGATCCTTGGCTAGGCGTGATGTGTCTTGTG
CTACTTGTTGTTTCTCNCGAAATTCCTTCCTACCTATTAGTGTGCATAAAATCTAAAATATAAATCGCAATGCAAAGAGAGGTTGCGTCATGGCTTCGCC
TTTACCCATCCTCACTCTTTCTTCTTGATTATGAGTCACCTCCATCCACATACTTCGTGATCATGTATGCTCTTGCCATTACCCGTTTTGGTTGTATGTC
CTATTTTACGAACAAAATCATATATCTTATCACATAACATCTCTATTATGCTTCAACTCACTCGCACGCCTCATCCACGAGCGACAGCTGAACATC
>LE_HBa0130P08_SP6_64862 (trimmed for quality and cloning vector)
TTTGGACACACTAAACTTAAGGAAAAACTATT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.738205
Expected error %
1.16604
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0130P08
Clone
Clone name
hba-130p8
LE_HBa0130P08
P130P08
Clone type
BAC
Contamination
none
Estimated length
56,812
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found