Clone Read LE_HBa0186H11_SP6_66020

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0186H11_SP6_66020
Primer
SP6
ID from Seq. Facility
LE_HBa_186_H11-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 984 raw
Sequence
>LE_HBa0186H11_SP6_66020 (raw untrimmed)
ACCCTAGCCATTAGCGAGTGGCATAACCTTCTCTTCCTAATAAATTAGTACGCTGTAGACTGGTGAACTTACAGCATTGACAGTGTACGGTGTTACGGAC
ATCACCTTCCCCTTGTGGCGAGATTCTTGTGCGACTATCTCAATTCAGTGACACACCCGATACTCTGCTCTCGGCGGACTATAATCTCGCCATTCCGCCA
CGTGCCTTACGCGCCGCCCCACAAGCCGTCTCTGGTGTGTAGACCACATCAGAGATTAAACTGGAAGAAGAAGACGAGGTATATAGATGAGTGACGACGC
ACGGATATAAGAATTGTACTATGAGAGCCGTGTGTGTCTACCTTCTCGCGCGCGCGTAGATGTAGCTCAGTGGGTCGGCTGTTATTTGTGCGCGTTTCGC
CTCGGTTCTCGCCAGCTGATAAGCAGTCGGCAGAATCATACAGCACTAAGACTTATCGCGCTCGCTAGTCATAATCGCGCTCGAGTGTGTGCATGTCTCG
ACTCGCCCAACGCTCCTACAGCTGAAACAGTCAGATCGTGAGGCCAGCGCATTACGGATGACTATTTACGGTAAGCACTCTCCATACACATGAACACATG
ACCAACACGCCGTCTATGCTCATCATATAAAAAAGAGTCAGGTCTATATGAGTAGAAGGCTATGAATGGCGTAAATTAAGTGCATACTGTCTATCCCTCC
GCAACACCGCAATATCGAACCGACCTCACGCGCTTAGCATCTGCCTACGAACGTATAAGAAATNTACATGAATTTGCTTGGATAATAAATATACAGAGTG
ACAGGAGAATGAATGGCGATCGCGGATGTGTAGTGGTGTGCGGCTACGCAACGTGCGACTGCGATACCGCTGTTTTCTGTAGACTGTATTGACGGCGTAA
ACTGCGATAGTGGGTGCGGTGTACTATCAGAGAACATCGTTAGACGAACACATCAATTAGTAGAGCCAACAGAGAAACAAAGAC
>LE_HBa0186H11_SP6_66020 (trimmed for quality and cloning vector)
TG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
8.32163
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0186H11
Clone
Clone name
hba-186h11
LE_HBa0186H11
C07HBa0186H11
P186H11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found