Clone Read LE_HBa0033D18_SP6_6706

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0033D18_SP6_6706
Primer
SP6
ID from Seq. Facility
LE_HBa_033_D18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
684 trimmed for vector and quality, 937 raw
Genbank Accession
DU026117
Sequence
>LE_HBa0033D18_SP6_6706 (raw untrimmed)
TGTAAAGGAAGAACCNNNAACAAGGGGCGGAAACAGACAACGNGGGAAAAATTCTACAACGCTCTCAATCTATTCAAAGGCCCCTCCTCTCAGGAAGACA
ATCTTACATGGCAAGTGGATAAACAAGGGAGATTTTCAGTCAAGTCAGCCTACAAAGAATTCAACCATTCTAACAACCAGATTGATTGTTGGCCATGGAA
ACTAATTTGGGAAGTCCAAATTCCTTATAAAGTGGCTTGTTTCATTTGGCTCGTGGCCATGAAAGCAGTCCTATCTTATGAAGGACTTTAGAAAAGGGGT
TTCCACTTGTGCTCTAAATGTTATATGTGAGGAGAAGAATCAGAGCCAATCAACCATCTTTTTTTACACTGCAAGTTAACTGGACAACTTTGGAGGATTT
TCCTTAATTTAAAAGGGATCATGTGGGTGATGCCAAGAGATACACTTGAAGTGCTGGAGAGCTGGAACAAATATAGCTTTCAGTCAGAACAGAAAGAAAG
ATGGAAGTTTATCCTGGCCTGCATTTGGTGGACAGTCTGGAAAGAGAGAAATCAAAGTTGTTTTGAAGACAATCACAGCTCTATCAGAAACTGAAGATTT
ATTGCCTAGCCTTTTCTATTGTTGGTGTAAACATGAATATATGGAAGACATGGAATATTTTATTGATGTTCTAGGATCTCTGTAAGTAAATTATAGCTTA
GTACATCTTCCTATATTTCCTTGTAAGTACGGATACCTGTATTTTTTATGCAGCAAATAGTTATACAAAAAATGTTACCTTTCTCAAAGAAAAAAAACAA
AGAAACAGAACATTTCCCATGTTCAAATAGGTAAATCAACTAAAGCAGTTTACTCCAGTCTTAAAATCAGCAAAAAAGTGGGCCTGAAAAAAGATCAATA
ATTACAATCTGTAGTTCAATTCGACACATGTTTCTCT
>LE_HBa0033D18_SP6_6706 (trimmed for quality and cloning vector)
AAAAATTCTACAACGCTCTCAATCTATTCAAAGGCCCCTCCTCTCAGGAAGACAATCTTACATGGCAAGTGGATAAACAAGGGAGATTTTCAGTCAAGTC
AGCCTACAAAGAATTCAACCATTCTAACAACCAGATTGATTGTTGGCCATGGAAACTAATTTGGGAAGTCCAAATTCCTTATAAAGTGGCTTGTTTCATT
TGGCTCGTGGCCATGAAAGCAGTCCTATCTTATGAAGGACTTTAGAAAAGGGGTTTCCACTTGTGCTCTAAATGTTATATGTGAGGAGAAGAATCAGAGC
CAATCAACCATCTTTTTTTACACTGCAAGTTAACTGGACAACTTTGGAGGATTTTCCTTAATTTAAAAGGGATCATGTGGGTGATGCCAAGAGATACACT
TGAAGTGCTGGAGAGCTGGAACAAATATAGCTTTCAGTCAGAACAGAAAGAAAGATGGAAGTTTATCCTGGCCTGCATTTGGTGGACAGTCTGGAAAGAG
AGAAATCAAAGTTGTTTTGAAGACAATCACAGCTCTATCAGAAACTGAAGATTTATTGCCTAGCCTTTTCTATTGTTGGTGTAAACATGAATATATGGAA
GACATGGAATATTTTATTGATGTTCTAGGATCTCTGTAAGTAAATTATAGCTTAGTACATCTTCCTATATTTCCTTGTAAGTAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956865
Expected error %
0.00800728
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE03883.2| Score 83 E Value 6e-15 Identity 10.30% Align. Length 473bp (69.15%) Frame 1
OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)] emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa (japonica cultivar-group)] ref|XP_473799.1| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT40556.1| Score 77 E Value 4e-13 Identity 9.40% Align. Length 455bp (66.52%) Frame 1
hypothetical protein PGEC542.21 [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0033D18
Clone
Clone name
hba-33d18
LE_HBa0033D18
P033D18
Clone type
BAC
Contamination
none
Estimated length
99,631
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found