Clone Read LE_HBa0033D18_T7_6707

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0033D18_T7_6707
Primer
T7
ID from Seq. Facility
LE_HBa_033_D18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
822 trimmed for vector and quality, 868 raw
Genbank Accession
DU026118
Sequence
>LE_HBa0033D18_T7_6707 (raw untrimmed)
TAGCCTGGTCCGGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTGTTACTTTTCTTTGTATTGCAAGTGTATACAAATATTTGATCATCAAA
TAAGTGTTTTGTTATGTTATGTTGCAGAGAAATAGCATTGAAGCAGCATCGAATTTTGTTTGTCGAAATCACTTGCCTCCTAGATTAAAAGACCAAATAT
TGGCTTATATGTGCTTAAGATTCAGGGCTGAGAGTCTAAACCAGCAGGAATTGATTGAACAGCTTCCCAAGACAATTTGCAAAAGCATAAGGCACCATTT
GTTTTTACCAACAGTGGAGAAAGTTTATCTTTTTAAAGGTGTCACAAAGGAAATTCTGTTACTTTTGGTAAGACATAACTTTTGTTAGAAAATGGTTTTA
GTATACATGTATAATTGTGTGTGTTCTAATTGATGAATCTACAGGTTGCAGATATGAAGGCTGAGTACATACCTCCAAGAGAGGATGTAATAATGCAGAA
CGAATCACCAGACGAGTTGTACATCATAGTGTCAGGGGAGGTGGAAATGATTGAATCTGAAATGGAGAATGAGCCAACTGTTTGGACTTTCAAATCTGGA
GATATGATAGGAGAAGTAGGGGCATTGTGTTGTAGACCTCAGAGCTACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATT
TGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATCATGATCAAGAACTTCCTTCAGGTTAGTGCAGAATACCCTGTGATATTCCTTTCCCTCTG
GACAATTTAGAGCTGAATCTTGATATTCTGCCAATTGTTATGGTAATTGCAGCATCATAAGAAGCTCA
>LE_HBa0033D18_T7_6707 (trimmed for quality and cloning vector)
AGCTTTGTTACTTTTCTTTGTATTGCAAGTGTATACAAATATTTGATCATCAAATAAGTGTTTTGTTATGTTATGTTGCAGAGAAATAGCATTGAAGCAG
CATCGAATTTTGTTTGTCGAAATCACTTGCCTCCTAGATTAAAAGACCAAATATTGGCTTATATGTGCTTAAGATTCAGGGCTGAGAGTCTAAACCAGCA
GGAATTGATTGAACAGCTTCCCAAGACAATTTGCAAAAGCATAAGGCACCATTTGTTTTTACCAACAGTGGAGAAAGTTTATCTTTTTAAAGGTGTCACA
AAGGAAATTCTGTTACTTTTGGTAAGACATAACTTTTGTTAGAAAATGGTTTTAGTATACATGTATAATTGTGTGTGTTCTAATTGATGAATCTACAGGT
TGCAGATATGAAGGCTGAGTACATACCTCCAAGAGAGGATGTAATAATGCAGAACGAATCACCAGACGAGTTGTACATCATAGTGTCAGGGGAGGTGGAA
ATGATTGAATCTGAAATGGAGAATGAGCCAACTGTTTGGACTTTCAAATCTGGAGATATGATAGGAGAAGTAGGGGCATTGTGTTGTAGACCTCAGAGCT
ACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATTTGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATCATGAT
CAAGAACTTCCTTCAGGTTAGTGCAGAATACCCTGTGATATTCCTTTCCCTCTGGACAATTTAGAGCTGAATCTTGATATTCTGCCAATTGTTATGGTAA
TTGCAGCATCATAAGAAGCTCA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.954422
Expected error %
0.0297613
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g22200.1 Score 136 E Value 6e-65 Identity 55.90% Align. Length 634bp (77.13%) Frame 2
68417.m03209 potassium channel protein 2 (AKT2) (AKT3) identical to potassium channel [Arabidopsis thaliana] gi|1100898|gb|AAA97865; Note: also identical to AKT3 [Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is a truncated version of AKT2, PMID:10852932; member of the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+ channel family, PMID:11500563; identical to cDNA inward-rectifying K+ channel (AKT3) GI:1172219
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g26650.1 Score 96 E Value 3e-41 Identity 41.50% Align. Length 634bp (77.13%) Frame 2
68415.m03197 potassium channel protein 1 (AKT1) identical to AKT1 [Arabidopsis thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+ channel family, PMID:11500563
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA70947.1| Score 179 E Value 3e-64 Identity 82.00% Align. Length 526bp (63.99%) Frame 2
putative inward rectifying potassium channel [Solanum tuberosum] pir||T07055 probable potassium channel protein SKT3 - potato (fragment)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD81033.1| Score 166 E Value 5e-80 Identity 74.80% Align. Length 634bp (77.13%) Frame 2
potassium channel NKT2 [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0033D18
Clone
Clone name
hba-33d18
LE_HBa0033D18
P033D18
Clone type
BAC
Contamination
none
Estimated length
99,631
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found