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Clone Read LE_HBa0033D19_T7_6709

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0033D19_T7_6709
Primer
T7
ID from Seq. Facility
LE_HBa_033_D19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
806 trimmed for vector and quality, 909 raw
Genbank Accession
DU026120
Sequence
>LE_HBa0033D19_T7_6709 (raw untrimmed)
GTTGGGTCGGGCCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCATACTCAGCCATGTTGTTCGTGCAATTAAATTGGCGCTTAGCTGCCA
TGGGATAGTGTTGACCATATTCTGACACTAAGACCACTCTGATACCTTTCTTTTGGTGATTCTCCGCTCCATCGAAGAATGTTTTCTAGCCAGGGTATAT
TTGAAAATATATCATTACCCACAAATGATACTTCTTTATCGTGAAAATAAGTCTTGAACGGTTCATACCCCTGCGTCAACAGGATTTTCCGCAAGATGAT
CACCAGGACCTATGTTTTTATCGCCTTTCGAGTCACATACACAATATCAAATTCACTCAAAAGCATCTGCCATTTGGCCAACTTTACAGTCGGTAACAGC
TTTTGGAAAATATACTTCAATGGGTCCATCCTGGAAATAAGGAATGTTTTATAAGAAGACAAATAATGTCTCAAATCTGAGCGATCCAGGTCAAAGCACA
ACATGTTCTCTTCAAAATGGTATAACGAGACTCATATGGCGTGAACTTCTTGCTTATATAATAAATGGCTCACTCCTTCTTCCCTATTTTGTCATGTTGC
CCATCATGCATCCAAATGCGTTATCTGAGACGGATTAATAGAACAACAATGGACTTCCTCCCCGCAGATGAATCAATACTGGTGGATTGGATAAATAGTT
CTTGATAGCATCAAAAGGAATTTTGACACTCTTCAATGCACTTTTTCGAAGCGTCTTTCTTCAATAACTTGAAAATAGACTCACACCAGAGTTGATTGAG
CTATGAATAGACTAATGTAGTTCAGCCTCCCTAAGAAACTCATCACCTCCTTCTTAGTCTTTGGAGAGGTAACTCTTTGATTTCCTTAACCCTGTAAGGA
TCGAGCTCA
>LE_HBa0033D19_T7_6709 (trimmed for quality and cloning vector)
AGTCGACCTGCAGGCATGCAAGCTTCATACTCAGCCATGTTGTTCGTGCAATTAAATTGGCGCTTAGCTGCCATGGGATAGTGTTGACCATATTCTGACA
CTAAGACCACTCTGATACCTTTCTTTTGGTGATTCTCCGCTCCATCGAAGAATGTTTTCTAGCCAGGGTATATTTGAAAATATATCATTACCCACAAATG
ATACTTCTTTATCGTGAAAATAAGTCTTGAACGGTTCATACCCCTGCGTCAACAGGATTTTCCGCAAGATGATCACCAGGACCTATGTTTTTATCGCCTT
TCGAGTCACATACACAATATCAAATTCACTCAAAAGCATCTGCCATTTGGCCAACTTTACAGTCGGTAACAGCTTTTGGAAAATATACTTCAATGGGTCC
ATCCTGGAAATAAGGAATGTTTTATAAGAAGACAAATAATGTCTCAAATCTGAGCGATCCAGGTCAAAGCACAACATGTTCTCTTCAAAATGGTATAACG
AGACTCATATGGCGTGAACTTCTTGCTTATATAATAAATGGCTCACTCCTTCTTCCCTATTTTGTCATGTTGCCCATCATGCATCCAAATGCGTTATCTG
AGACGGATTAATAGAACAACAATGGACTTCCTCCCCGCAGATGAATCAATACTGGTGGATTGGATAAATAGTTCTTGATAGCATCAAAAGGAATTTTGAC
ACTCTTCAATGCACTTTTTCGAAGCGTCTTTCTTCAATAACTTGAAAATAGACTCACACCAGAGTTGATTGAGCTATGAATAGACTAATGTAGTTCAGCC
TCCCTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.9739
Expected error %
0.0221899
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39963.1| Score 105 E Value 2e-42 Identity 45.60% Align. Length 565bp (70.10%) Frame 2
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 103 E Value 3e-50 Identity 66.30% Align. Length 560bp (69.48%) Frame 1
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0033D19
Clone
Clone name
hba-33d19
LE_HBa0033D19
P033D19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found