Clone Read LE_HBa0068O01_SP6_67104

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0068O01_SP6_67104
Primer
SP6
ID from Seq. Facility
LE_HBa_068_O01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
723 trimmed for vector and quality, 764 raw
Sequence
>LE_HBa0068O01_SP6_67104 (raw untrimmed)
GATTTCACCAATGGTTCAGGCATGCAGATCTCCAATACCTGTATTAGTTGAATACGAGTCACATATGTCTTCCTCTTATACGTATTCTGTACCTTAATAA
AATTATTACTTATTGAAAAACGTTCAGGTATGTGATGAAATAGAACATCTAATGGATGATGATGGTGACATGGCTGAGATGTACTTAACAGAGAAGAAAC
AGAGGAAGGAGGATTATTTAAATAATGATTCATATGATCAAGCGGATATATATGGAAAAATTAGAGGAGCAGCAAGATCTGCTCCAGTATCACCTGCATC
ATCAACTACTGGGATGCATAAGTTGCAACGGGCATTCAGTAATTTGAGCTCAAGCAAACACGGAAGCATTTCAGCTTCATCTAATTGTCAAGAAAATATT
GATCAGCTTGAAATGTTGCTTGAAACATATTTTGTGGTCATTGACAGCGCTCTGAACAAGTTGTCATCAGTAAGAGATTCTTATATTAATAGCTTTTCTT
CTTCATATCCAGAAAATCTTATATTTATACTGCAAAAATAATTAAATTAGAATGAACTGAACTCCTTCCCTGATAGATTCAAGAAATGCAAGTAGAGTTG
GATTACGATTCTTACCAAATAATCTTAAGATTTACTTCCTCCGCTGCTATTTTTTTGTTTGGTTTTGAGTTGACATAGATTTTAAGAAAGTCTAGAAGAA
TCTTGTGGTTCTTCAACTAAAGATATGTAGAATGACCAAAATGTCCTTTAATCTTGTGGTCCTA
>LE_HBa0068O01_SP6_67104 (trimmed for quality and cloning vector)
CATGCAGATCTCCAATACCTGTATTAGTTGAATACGAGTCACATATGTCTTCCTCTTATACGTATTCTGTACCTTAATAAAATTATTACTTATTGAAAAA
CGTTCAGGTATGTGATGAAATAGAACATCTAATGGATGATGATGGTGACATGGCTGAGATGTACTTAACAGAGAAGAAACAGAGGAAGGAGGATTATTTA
AATAATGATTCATATGATCAAGCGGATATATATGGAAAAATTAGAGGAGCAGCAAGATCTGCTCCAGTATCACCTGCATCATCAACTACTGGGATGCATA
AGTTGCAACGGGCATTCAGTAATTTGAGCTCAAGCAAACACGGAAGCATTTCAGCTTCATCTAATTGTCAAGAAAATATTGATCAGCTTGAAATGTTGCT
TGAAACATATTTTGTGGTCATTGACAGCGCTCTGAACAAGTTGTCATCAGTAAGAGATTCTTATATTAATAGCTTTTCTTCTTCATATCCAGAAAATCTT
ATATTTATACTGCAAAAATAATTAAATTAGAATGAACTGAACTCCTTCCCTGATAGATTCAAGAAATGCAAGTAGAGTTGGATTACGATTCTTACCAAAT
AATCTTAAGATTTACTTCCTCCGCTGCTATTTTTTTGTTTGGTTTTGAGTTGACATAGATTTTAAGAAAGTCTAGAAGAATCTTGTGGTTCTTCAACTAA
AGATATGTAGAATGACCAAAATG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.944372
Expected error %
0.0533595
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g03620.1 Score 96 E Value 2e-20 Identity 15.50% Align. Length 353bp (48.82%) Frame 1
68415.m00322 magnesium transporter CorA-like family protein (MRS2-5) weak similarity to SP|Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein; supporting cDNA gi|25360881|gb|AY150290.1|
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g80900.1 Score 84 E Value 6e-17 Identity 14.40% Align. Length 368bp (50.90%) Frame 1
68414.m09492 magnesium transporter CorA-like family protein (MGT1) (MRS2) low similarity to SP|Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM19344.1| Score 96 E Value 7e-19 Identity 15.50% Align. Length 353bp (48.82%) Frame 1
hypothetical protein [Arabidopsis thaliana] gb|AAM20217.1| unknown protein [Arabidopsis thaliana] gb|AAL49876.1| unknown protein [Arabidopsis thaliana] gb|AAD20070.1| hypothetical protein [Arabidopsis thaliana] ref|NP_178460.1| magnesium transporter CorA-like family protein (MRS2-5) [Arabidopsis thaliana] pir||F84450 hypothetical protein At2g03620 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAN73215.1| Score 96 E Value 7e-19 Identity 15.50% Align. Length 353bp (48.82%) Frame 1
MRS2-5 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0068O01
Clone
Clone name
hba-68o1
LE_HBa0068O01
P068O01
Clone type
BAC
Contamination
none
Estimated length
109,377
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found