Clone Read LE_HBa0068O01_T7_67105

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0068O01_T7_67105
Primer
T7
ID from Seq. Facility
LE_HBa_068_O01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
615 trimmed for vector and quality, 834 raw
Sequence
>LE_HBa0068O01_T7_67105 (raw untrimmed)
TATTATTCTGTTCCGAGGGGATTCTCTAGAAGTCGACCTGCAGGCATGCAAGCTTCACAAGTCTTTATATGGACTGCCTTTAGCCCCTAAACAATGGAAC
CTAAAACTTACTGAAGCACTGATTGATATGGGGTTCTTGCAATTTCATTATGATTATTCATTGTTTACAAAGAGAGTAGGGAAAGAATTTTTTGTCATAC
TTGTATATGTAGATGATCTTTTGGTCACTGATAGCAACTTAAATCTCATACAACAAGTTAGAAAAGACTTACAACACAGGTTCAAAATGAAGGATCTTGG
AGAGTTGAAATATTTTCTTGGAATTGAATTTTTCAGAAATACAGATGGCATTCTTATAAATCAGAGAGAAAGTATGCACTTGGACTTGCAGGGTGTAAAC
CTGCATCCACTCCCTTAGAGTTCAATCACAAGTTGACATCCATTGTGTTTGATGAATGCATAGGAATAAATACAGAAGATAAAGCTCTTGATGATTATGG
AAAATATCAAAGATTGGTAGGTAGGCACTTAGTTAATATATGCACTCATCAAAAAATTCTCATATGGAAGCAGCACTTAGAGTGGTAAGATACATAAAAG
GTACAACAGGTCTTGGTTTGTTCATGCCAAGCAACAATGTGTCTGAATTTGTAGCTTACTGTGATTCAAACTGGGGAGCATGTATAGAGTCCACGAAATT
CACTGACTGGCGACTTAGTCAAGTTGGGAAATGCTTTTGGTGTCTTGGAAAAGCAAAGAAAACAAAACACAATGTCAAGAAGTTCTGCATAAGCAGATTT
CAAAGTATGGCTACCACAGTAGCTGAGATAGTTG
>LE_HBa0068O01_T7_67105 (trimmed for quality and cloning vector)
TGCAGGCATGCAAGCTTCACAAGTCTTTATATGGACTGCCTTTAGCCCCTAAACAATGGAACCTAAAACTTACTGAAGCACTGATTGATATGGGGTTCTT
GCAATTTCATTATGATTATTCATTGTTTACAAAGAGAGTAGGGAAAGAATTTTTTGTCATACTTGTATATGTAGATGATCTTTTGGTCACTGATAGCAAC
TTAAATCTCATACAACAAGTTAGAAAAGACTTACAACACAGGTTCAAAATGAAGGATCTTGGAGAGTTGAAATATTTTCTTGGAATTGAATTTTTCAGAA
ATACAGATGGCATTCTTATAAATCAGAGAGAAAGTATGCACTTGGACTTGCAGGGTGTAAACCTGCATCCACTCCCTTAGAGTTCAATCACAAGTTGACA
TCCATTGTGTTTGATGAATGCATAGGAATAAATACAGAAGATAAAGCTCTTGATGATTATGGAAAATATCAAAGATTGGTAGGTAGGCACTTAGTTAATA
TATGCACTCATCAAAAAATTCTCATATGGAAGCAGCACTTAGAGTGGTAAGATACATAAAAGGTACAACAGGTCTTGGTTTGTTCATGCCAAGCAACAAT
GTGTCTGAATTTGTA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.938691
Expected error %
0.205178
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 99 E Value 8e-29 Identity 44.40% Align. Length 585bp (95.12%) Frame 1
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89728.1| Score 124 E Value 2e-37 Identity 53.60% Align. Length 538bp (87.48%) Frame 1
putative retroelement pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAR24647.1| Score 109 E Value 2e-34 Identity 49.10% Align. Length 597bp (97.07%) Frame 1
At2g23330 [Arabidopsis thaliana] gb|AAM98191.1| unknown protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0068O01
Clone
Clone name
hba-68o1
LE_HBa0068O01
P068O01
Clone type
BAC
Contamination
none
Estimated length
109,377
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found