Clone Read LE_HBa0033L11_SP6_7076

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0033L11_SP6_7076
Primer
SP6
ID from Seq. Facility
LE_HBa_033_L11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
567 trimmed for vector and quality, 958 raw
Genbank Accession
DU026447
Sequence
>LE_HBa0033L11_SP6_7076 (raw untrimmed)
AATATGGCCCTACCATGCGGAAACCAACTACCACTAGGTGTTGATCATGCTCTACAGGATGATATTGATGTTGGAACTGCTAGTACGATAATGTTAGGGC
AGAACAATAGCGCTAGCTCAAGTGGTGAAAATGTGAATGCGAATACAAAAGCAGATGGCAGTTTTATGCCTCATTCTTTAGATTCTGATGCGATTTCTGA
TACCATCAAATCATTTTTCCCAATGGGAGGTAGTGGTTCAAATGAAGGTAATTCTTTCCAGAGTTTTCAACAACATAATTTGATGTCAAGAAGCCAAGAT
TTGAAGCTTTCTTTACAATCTTTTCAAGATCCACAAGCTCAGTTTGAAGCATCAAATTTCTTTACTGGATTTGATGCTTCAGTGTGGCCTCAGCACCAGC
AGCAGCCGGTTGAACTTGGTCGACTGGCGGCTGCTCGTGGAGACATTGGTGGCGGCATCANTTCCTTTAGGGTTCAAGATTCCAGAGGAGGTGTGGACAG
GAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCACTCCTTATGTTGATGTTGATCCAAAAAAGAGAGACAAGCTTGATGCCGAGGCTTTGAA
ATGTTACTTCATAGGATATGGTTCTGATTTGTTTAGTTATAGGTTTTGGGATGGACAAGAAAAAAAAGTCTTGAGAAATTGTGACTTAACATTAAATGAG
TCTGTCCTGTTTAATGAAAGAGAAGAAAATGTTCTAAAAAATTCGAAGCCAAGTGGGGAGTAGGGGATAATTTGGGGATAATAGCCCTACAGGAGCTAAT
CTTATCATACCCGCTCCTTATGTATACTTTAGTTGAATCTGTTTCGGCTCGGGGGGTTGGTGGCATGACTGATTGCTTGGGGAACACGAAGGCATACTCT
ACACTTATTGTGTTGTTCCTATAAATATGTCATAATTTAGTTTATGTTTATGGATTTA
>LE_HBa0033L11_SP6_7076 (trimmed for quality and cloning vector)
AAACCAACTACCACTAGGTGTTGATCATGCTCTACAGGATGATATTGATGTTGGAACTGCTAGTACGATAATGTTAGGGCAGAACAATAGCGCTAGCTCA
AGTGGTGAAAATGTGAATGCGAATACAAAAGCAGATGGCAGTTTTATGCCTCATTCTTTAGATTCTGATGCGATTTCTGATACCATCAAATCATTTTTCC
CAATGGGAGGTAGTGGTTCAAATGAAGGTAATTCTTTCCAGAGTTTTCAACAACATAATTTGATGTCAAGAAGCCAAGATTTGAAGCTTTCTTTACAATC
TTTTCAAGATCCACAAGCTCAGTTTGAAGCATCAAATTTCTTTACTGGATTTGATGCTTCAGTGTGGCCTCAGCACCAGCAGCAGCCGGTTGAACTTGGT
CGACTGGCGGCTGCTCGTGGAGACATTGGTGGCGGCATCANTTCCTTTAGGGTTCAAGATTCCAGAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCA
CACTTGAGGACTTTTGGTTGCACTCCTTATGTTGATGTTGATCCAAAAAAGAGAGACAAGCTTGATG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.980775
Expected error %
0.632993
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO43102.1| Score 77 E Value 3e-13 Identity 19.30% Align. Length 242bp (42.68%) Frame 3
mutant cincinnata [Antirrhinum majus]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG43412.1| Score 70 E Value 4e-11 Identity 17.90% Align. Length 245bp (43.21%) Frame 3
cycloidea [Lycopersicon esculentum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0033L11
Clone
Clone name
hba-33l11
LE_HBa0033L11
C12HBa0033L11
P033L11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found