Clone Read LE_HBa0138P06_SP6_71002

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0138P06_SP6_71002
Primer
SP6
ID from Seq. Facility
LE_HBa_138_P06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1178 raw
Sequence
>LE_HBa0138P06_SP6_71002 (raw untrimmed)
AGAGAGAGGAATGAGATATAGGGGATCAGGACAGTTGCATTCAGAAACCAGACTCAAAAAAAGGGACCACTGTCAGAGGTAACAATCTAGGATTACTATC
TTTCATAAAACCCACGGGTGACACAGTGAGTGACCATATCTAACAATAAACAGCGCCAGCGACAGGGCTCACATCCACAGGTTATAAGTTTCTAACAAAT
TAGACCGGTGCGGTACGCAGGATCAACTGTAATAAATAGGTAGGTTGTAAGTGTATAATACCATATGTGTATAATTACTACAAAATTAAGCAACTCACAG
CTAGTTATCTATCATTATTAACAATACATGTAACGAATTGCACGTACTACCTATATCTTAAATTAGAGCTGGGGCGTAGACTCTAAACCCAATCCAACAA
ATAGGCGCAGCGGATGGAAGGGTGCTCTCCCTGTTTGGATCCTACACCAAATACAGAAAAATGGCGCATCTCTAGGCTATCAATCCATCCTTGAGCAGAC
CAACACCTAACTCTAAAAAAGCGGCCAGCCGAGGCGTTCAATACGCAACGTTTGTATCTTCCATACACATAATATACTAAACGCTCACTTACCTATCTTA
GAAACAACGGCGCCACAGCACGGTCAAAAACCCCAAGCTTATCGTTCTTATTTACTAATACTGCCTGCGATAAGGGTGGGTTGTCCTCTCGTAGGAGACC
CAGAAGCCAGATCTGAAGAATAGGGCGCACGGATATGTGAAGGACTCCAAATTCATGGAACTACTACCATCTCAATATCCGATAAAAATATACGCCCCTA
TGTATGGCTAAAAAACCCAACCTCAGATGATAATAACCCTACCCAAAACCCAAACTCAAAAAAGAGGGCGCACCCTAAGGGACAAAGAGACCTAATTTCA
GTGGAAGCTCAGATCGCACCAAAGACTCCATAGCCTATAATACAAGGTCTCTGGATCAATGTTATAATAACCAATTACTTTGTCCGATCCTCCATCCCAA
ATACAGAACAAATATGGACCCCCCGCGTACTGGTTATCACTCCACGAGGTTATTTATCTTTCCCTATAAACATAACACAAACCTCTAGTTTACATGCTGC
TCTTTTAGACATAGCAAATGTCCCCTCACGCGATCTTCGCTATTACCGTATGCTCCTCTTCTCTTTCTTTCTCTCTTT
>LE_HBa0138P06_SP6_71002 (trimmed for quality and cloning vector)
AAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.84028
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0138P06
Clone
Clone name
hba-138p6
LE_HBa0138P06
P138P06
Clone type
BAC
Contamination
none
Estimated length
79,307
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found