Clone Read LE_HBa0160B12_T7_76487

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0160B12_T7_76487
Primer
T7
ID from Seq. Facility
LE_HBa_160_B12-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
217 trimmed for vector and quality, 744 raw
Sequence
>LE_HBa0160B12_T7_76487 (raw untrimmed)
AATAAATATTTTAGCCTCTTTTGATTGCTCAACTTTACAAAATTGTACCACAAACTATCAATGAAATAAAGGAATCAACGCCAATTCACTCCACCATGAT
TTGCGCACAGATGGCTCTCATAATGGACATGTGTATNTAGTCGGCAGTTAGGTGAGAACTAACTAGATTAGAACGCATCTACCTGTGTATATGCTTAGGC
TCCTATCCTTAACATCGATTACTG
ATCAAATAAACCTTTGCATGTATAGCAGTGTAGCAAACAACATTATGGAGCACATCACTTTATCTTTCATATCCTG
CCATAATTTAATTGACTCATTAATGTCCCCATGGTCGGAAAGCCAGTGAAGAAGGGATGTATACGTCACTGCATCTATCTTGATTTCTTTGTCTTGCATC
TGCTGAAAGATATAGTTCATGGATGAAATCCTCCCAGCTTCCCCAAATATATCCAACATAGTCGTGTAGGTAAACTGGTCATGCTTAAAGCCTCTCACTT
AGAGGCCAACTGAAAATCAACAGACTATCCCATAGGAGGATGGGCTCGAGAACTGATTAATAGTGTAGGATCCATTTTATGGATGTACACAACTGCTCTT
GACTGATCCAAGTTGAATCTAGCTATGTGTATTCTGTTTGTTCCTCTGAACATATGAGACATTGTTGTTCATAAAATTAGTACTTACTTCGACTAAATCT
TCACGATCCCCTCTCGCACGTAATGTACATGTCATACCATCCCT
>LE_HBa0160B12_T7_76487 (trimmed for quality and cloning vector)
ATCAAATAAACCTTTGCATGTATAGCAGTGTAGCAAACAACATTATGGAGCACATCACTTTATCTTTCATATCCTGCCATAATTTAATTGACTCATTAAT
GTCCCCATGGTCGGAAAGCCAGTGAAGAAGGGATGTATACGTCACTGCATCTATCTTGATTTCTTTGTCTTGCATCTGCTGAAAGATATAGTTCATGGAT
GAAATCCTCCCAGCTTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.94863
Expected error %
1.99936
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g01390.1 Score 67 E Value 2e-12 Identity 17.30% Align. Length 155bp (71.43%) Frame 3
68415.m00056 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0160B12
Clone
Clone name
hba-160b12
LE_HBa0160B12
P160B12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found