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Clone Read LE_HBa0160H08_T7_76767

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0160H08_T7_76767
Primer
T7
ID from Seq. Facility
LE_HBa_160_H08-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
669 trimmed for vector and quality, 837 raw
Sequence
>LE_HBa0160H08_T7_76767 (raw untrimmed)
CTAACCTCGGTACCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCTTTGGCATGCAGGTTTTTCCTTGGAGATTCATCAAAGACTTTTCA
AAGATTGCACATCCCTTATGCAAACATCTGGAGAAAGATTGTACTTTTTTTTTGATGAATCCTGTCTTAAAGCATTCAGTGAGCTAAAAGAAAAATTGGT
GTCTTTGCCTATCATTAGTTCTCCGGATTGGAACAGTCCATTTGAGGTTATGTGCGATGCTAGTGGGGTGGCTCTTTGTGTAGTATTGGGACAGAGAAAA
AACAAAATCCTTCACCCCATTTACTATGCTAGTAAAGCCCTAAATGAAGCTCAGAAGAACTACACAGTAACCGAGCAAGAACTCCTTGCAGTAGTCTTTG
CTTTTGAGAAATTTCACTCCTATTTACTAGGTACTAGAGTTATATTGCATACTGACCACTCAACATTGAGATATTTGATGCCAAAGAAGGATGCGAAACC
TAGGTTGATTTGTTTGGTATTACTGCTACAAGAATTTGACTTTGAAGTGATGGATAGAAAAGGAACTGGAAATCAAGTTGCTGATCACTTGTCTCGTCAA
GAGGATGAAGCTATGAGAGAGTTAGGGGATAAGACAGGCATTGATGATACTTTCTCCGATGAGCATGTATTGGCAGCTTCACAAGACTTGATCCCATAGT
TCACAGATTTTGCTAACTATCTGGGTAGTGAAATTGTTCCCTCGGACTTCTCCTTTCATCAAGAAAAAAATTCATGTAAAATGTGAAAAAGTTCTTTTTG
AATGCACCCTACTTATTTGGAATTGTGCCAACATGAT
>LE_HBa0160H08_T7_76767 (trimmed for quality and cloning vector)
AGCTTTCTTTGGCATGCAGGTTTTTCCTTGGAGATTCATCAAAGACTTTTCAAAGATTGCACATCCCTTATGCAAACATCTGGAGAAAGATTGTACTTTT
TTTTTGATGAATCCTGTCTTAAAGCATTCAGTGAGCTAAAAGAAAAATTGGTGTCTTTGCCTATCATTAGTTCTCCGGATTGGAACAGTCCATTTGAGGT
TATGTGCGATGCTAGTGGGGTGGCTCTTTGTGTAGTATTGGGACAGAGAAAAAACAAAATCCTTCACCCCATTTACTATGCTAGTAAAGCCCTAAATGAA
GCTCAGAAGAACTACACAGTAACCGAGCAAGAACTCCTTGCAGTAGTCTTTGCTTTTGAGAAATTTCACTCCTATTTACTAGGTACTAGAGTTATATTGC
ATACTGACCACTCAACATTGAGATATTTGATGCCAAAGAAGGATGCGAAACCTAGGTTGATTTGTTTGGTATTACTGCTACAAGAATTTGACTTTGAAGT
GATGGATAGAAAAGGAACTGGAAATCAAGTTGCTGATCACTTGTCTCGTCAAGAGGATGAAGCTATGAGAGAGTTAGGGGATAAGACAGGCATTGATGAT
ACTTTCTCCGATGAGCATGTATTGGCAGCTTCACAAGACTTGATCCCATAGTTCACAGATTTTGCTAAC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.964687
Expected error %
0.667706
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 258 E Value 1e-67 Identity 20.90% Align. Length 668bp (99.85%) Frame 2
putative reverse transcriptase [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB02143.1| Score 213 E Value 4e-54 Identity 17.90% Align. Length 668bp (99.85%) Frame 2
retroelement pol polyprotein-like [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0160H08
Clone
Clone name
hba-160h8
LE_HBa0160H08
C03HBa0160H08
P160H08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found