Clone Read LE_HBa0166B15_T7_78029

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0166B15_T7_78029
Primer
T7
ID from Seq. Facility
LE_HBa_166_B15-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
715 trimmed for vector and quality, 758 raw
Sequence
>LE_HBa0166B15_T7_78029 (raw untrimmed)
CTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAATAGGAAGCCTTACATTTGTCTAAAGTGAGTAAAAACTCCCTCCATCCCTG
CTTTCTTGAGATGCTTCTTTCACTATCACACAAGTACATCGTCCAATGTCTATAGGCAAAGGCCTATACAACAATGACCTGAAAATAGAATAAAAAATAC
TACTGTCATCAATAATCATGATCAAAGAACTGATTTTTATCTCTAAATCAAAGACATTTACAGACCTATTAGGAAGTGTAGACCAAGAAGAAGCTGGAGC
AGCTTCAGAATCCGAATAATCCCAAATATTAGCAGAATTCGGGGTCTCAGTATCATCCGCATGCTCCCAAATTTTCAACCCAATTTTAGAATCAGGTTCA
TTTTTTTGTATACATAGCTGAAGTGAAGATGGCCTCAGAACAGAGTCTTTCACATCAGCCCCAACCCTCGTAAACTCATTATTCACAACCTTACTAGTCC
AATCATATTCTTTATCACAAAGATTGGATTTTTCAGGTTTATGTGGTGCAGAATTTTCTTTATTATCAGATATAACAAGTTGGTTCTGAAGCAAATGAAC
ACCCAATGCTTCACCAACCGTACTGCTGCTCCGGTTTTGTCCGAGCTCATTTAAAGGATTATCATAAAGGGAATTATAAGAAGTCGAAGAACGAAGAGGG
TTTGTAGTTTTCTTGAAACTAGACATTTTTGAACACCCAATTTGGGTGAAAAGAACAA
>LE_HBa0166B15_T7_78029 (trimmed for quality and cloning vector)
AGCTTAATAGGAAGCCTTACATTTGTCTAAAGTGAGTAAAAACTCCCTCCATCCCTGCTTTCTTGAGATGCTTCTTTCACTATCACACAAGTACATCGTC
CAATGTCTATAGGCAAAGGCCTATACAACAATGACCTGAAAATAGAATAAAAAATACTACTGTCATCAATAATCATGATCAAAGAACTGATTTTTATCTC
TAAATCAAAGACATTTACAGACCTATTAGGAAGTGTAGACCAAGAAGAAGCTGGAGCAGCTTCAGAATCCGAATAATCCCAAATATTAGCAGAATTCGGG
GTCTCAGTATCATCCGCATGCTCCCAAATTTTCAACCCAATTTTAGAATCAGGTTCATTTTTTTGTATACATAGCTGAAGTGAAGATGGCCTCAGAACAG
AGTCTTTCACATCAGCCCCAACCCTCGTAAACTCATTATTCACAACCTTACTAGTCCAATCATATTCTTTATCACAAAGATTGGATTTTTCAGGTTTATG
TGGTGCAGAATTTTCTTTATTATCAGATATAACAAGTTGGTTCTGAAGCAAATGAACACCCAATGCTTCACCAACCGTACTGCTGCTCCGGTTTTGTCCG
AGCTCATTTAAAGGATTATCATAAAGGGAATTATAAGAAGTCGAAGAACGAAGAGGGTTTGTAGTTTTCTTGAAACTAGACATTTTTGAACACCCAATTT
GGGTGAAAAGAACAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.958311
Expected error %
0.0630854
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g16070.1 Score 98 E Value 4e-21 Identity 13.30% Align. Length 503bp (70.35%) Frame 1
68414.m01928 tubby family protein similar to Tubby related protein 1 (Tubby-like protein 1) (Swiss-Prot:Q9Z273) [Mus musculus]; low similarity to Tubby related protein 1 (Tubby-like protein 1) (Swiss-Prot:O0029) {Homo sapiens}; similar to phosphodiesterase (GI:467578) [Mus musculus]; contains Pfam profile PF01167: Tub family
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM53302.1| Score 98 E Value 2e-19 Identity 13.30% Align. Length 503bp (70.35%) Frame 1
unknown protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_173059.1| Score 98 E Value 2e-19 Identity 13.30% Align. Length 503bp (70.35%) Frame 1
tubby family protein [Arabidopsis thaliana] gb|AAF18504.1| Contains similarity to gi|1171967 phosphodiesterase from Mus musculus and is a member of the PF|01167 Tub family. [Arabidopsis thaliana] gb|AAQ06242.1| tubby-like protein TULP8 [Arabidopsis thaliana] pir||E86295 hypothetical protein T24D18.17 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0166B15
Clone
Clone name
hba-166b15
LE_HBa0166B15
C03HBa0166B15
P166B15
Clone type
BAC
Contamination
none
Estimated length
51,222
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found