Clone Read LE_HBa0021L02_SP6_80018

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0021L02_SP6_80018
Primer
SP6
ID from Seq. Facility
LE_HBa_021_L02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
586 trimmed for vector and quality, 752 raw
Genbank Accession
DU075570
Sequence
>LE_HBa0021L02_SP6_80018 (raw untrimmed)
GTTCCATTTTGGACTATAGAATACTCAGCTTAGCCGTCCCCCCCGCCACCGTCCTCATCGGCTCCGACTTGCACCTTGTCAACACTAACGGCTCGTAAGC
CACTGCGTTTACCAGTTTCTGCTCTATCATCGTTGCCATGGATATCGCCGGCGAAACTCCGGTCGCCGGGAAAGAACACGATGACCTTGGTGGTTGGAGG
AGGAGATGTTGTTGTTTACTCTTGTCAATGCTTCGCCTTCTCTTTGGATCCTCGGGAATTTCATTCTTCTTCTTCTTTGTCGTCACTGTTTTAGCTTGTT
TTACTTCGGTGCTGCTGTATACCCATGTTTCCTTAGAAACCTCCATGGATAGCTTGGGCTCACACATCATTAGAAGCAAGCAATCTGGAAGAATTGATTC
GTTCTGTTGTTTTCTCGATTCTTTTTCGTTTTCATTGTTTGAAAATACTGCATCAGATTTTGCTTCTTCTTCGTGTTTGTGTTCGTGTTGAATTTGTTTT
GCATCTTCTCTATCAATGTGTTCTAACGAGAGTGTTTCTTCGATCACCTTCTTAATAATTGATTTGAACCTCTCTTCTTCTTCCAATGTTTCATCTTCTT
CGTTTTCTGAGAAAGATGATCAACCTTGAATGCCGCTGTCTTCTTCTTCTTCTTTTTTCTCTGATACAAGGAGTTGATCTACTATTGGAAGTTTACTTTT
ACTTGTATTCTACTGGTTTTTATTCTCTTTCATCTCAATGTCTTTCTACATT
>LE_HBa0021L02_SP6_80018 (trimmed for quality and cloning vector)
GCTTAGCCGTCCCCCCCGCCACCGTCCTCATCGGCTCCGACTTGCACCTTGTCAACACTAACGGCTCGTAAGCCACTGCGTTTACCAGTTTCTGCTCTAT
CATCGTTGCCATGGATATCGCCGGCGAAACTCCGGTCGCCGGGAAAGAACACGATGACCTTGGTGGTTGGAGGAGGAGATGTTGTTGTTTACTCTTGTCA
ATGCTTCGCCTTCTCTTTGGATCCTCGGGAATTTCATTCTTCTTCTTCTTTGTCGTCACTGTTTTAGCTTGTTTTACTTCGGTGCTGCTGTATACCCATG
TTTCCTTAGAAACCTCCATGGATAGCTTGGGCTCACACATCATTAGAAGCAAGCAATCTGGAAGAATTGATTCGTTCTGTTGTTTTCTCGATTCTTTTTC
GTTTTCATTGTTTGAAAATACTGCATCAGATTTTGCTTCTTCTTCGTGTTTGTGTTCGTGTTGAATTTGTTTTGCATCTTCTCTATCAATGTGTTCTAAC
GAGAGTGTTTCTTCGATCACCTTCTTAATAATTGATTTGAACCTCTCTTCTTCTTCCAATGTTTCATCTTCTTCGTTTTCTGAGAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.95934
Expected error %
0.263908
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g15095.1 Score 94 E Value 7e-20 Identity 16.70% Align. Length 383bp (65.36%) Frame 3
68416.m01909 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAN41348.1| Score 94 E Value 3e-18 Identity 16.70% Align. Length 383bp (65.36%) Frame 3
unknown protein [Arabidopsis thaliana] ref|NP_188128.1| expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0021L02
Clone
Clone name
hba-21l2
LE_HBa0021L02
C12HBa0021L02
P021L02
Clone type
BAC
Contamination
none
Estimated length
127,568
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found