Clone Read LE_HBa0037O01_SP6_80928

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0037O01_SP6_80928
Primer
SP6
ID from Seq. Facility
LE_HBa_037_O01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1472 raw
Sequence
>LE_HBa0037O01_SP6_80928 (raw untrimmed)
TGCACACTACAGGACGGCCGTACGAGGCTGGGAACAGAAACCATGAACCCATCTCTCATACCCTTCTCCTCCAATAAATAATACCCATCAATCCACAGCC
GCGGCGCGCATGCGCGGTAGACGTGCATGCTTAGGGCATTGCATGAGACTATGGGATCCATAGTCATCTCCAATCCACGGAAGCGCCTTTCTACCGCGAT
GATGCACCAACGCACACTCGTATACTTTCTACGTTTCAATTCCTGCCGTTTATTTCAGACATACTCGACGACAACATGTCTTTCATCGAATATAGACAAT
GTACCGGACCTATTCTCGGCANACACTTNGAGCACAACTCTCTCTCTCGAAGTTTCATATTGTGAATTTACTAATCACTGTCGGAGCGATGAAGATAAGA
GTGCAATCGTTGCTTGATACCCATCGCATACTCATGTCCTAGTCTCTTCCCTCTCCTATGCTATGCATCGCCTATACCACAGAACTAACCACAGAGGCAT
CTCCTACTACGCGAACATACGACCTGCGCACACGACGCGCGCTACTGTCCTTAGCGTCACTCGTCTGCGTGCCTCCTACGTACACGGATGCGAACAACGA
CTCAACAGAGCATCCATACNGTCACACGGCNATGCAATCAGCGANATGGCCTCTATCTGACAAGCGCACTTATCTCAAACTCAATAATATATGACTACAT
ATATATAGCTACATCCCATCTTGTTCTTACCACCTCCTCTCTCCGCATCTCAACTCCACGCACGACTTCACCGTCTTGCTCTGGTGTTGGCCTCGAGAAC
ACGATATAGNANGCCAGACAATTGATCTTCTTGTTTATTGTGTCTGTCTCCATCACACGACCAGCGGTATGGAGGCCCTATGCTGAATGTTTGCTCATGA
CGCANACACACGTAGGACACATCGTAGCCCCTTGCGCACATCACACGCGCCGCGTCAGAATGCCATCGTCACTTCGTATACCGCCCNGTCCGTCACCCGA
AACGGAAACCACGATCACCAATACAGCCGACGANATGCGACTGCACTAGCTGAGCATAACCGACCCCACACATAGACTACCACCTACGTACTAACTCGAC
TTGCTCGCTAGATCTGGTACTTCGATGCTGTTCTCGCGCACCCTTCGCAGTGCATGGCTTCGCATCCGCCACACACTACTGACCCATACGATCTAAATTA
CATATATTGGCGCTATGTTACCCCATGGTATGATATCAGATTCGGATGTACTGACGTGGCTGTGGCTTGTGCATCGATCATGANCACGCACGCCGTTTCG
CAGGCTGGCCGCGTCGTTGCTACAGTCTCCGCTGGACACTGGCTCCAGTCGGCTACACCCATCCTGTCACCGCGCTACTCCATACCANCACACACCATTG
CTCGCCGNTGGCTGCCAACCTACTATCTTTCTTCATCTCTCTCACTTCCTCCGCATACTCACATTTGACCTN
>LE_HBa0037O01_SP6_80928 (trimmed for quality and cloning vector)
AC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.10793
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0037O01
Clone
Clone name
hba-37o1
LE_HBa0037O01
C08HBa0037O01
P037O01
Clone type
BAC
Contamination
none
Estimated length
115,811
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found