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Clone Read LE_HBa0037O11_T7_80949

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0037O11_T7_80949
Primer
T7
ID from Seq. Facility
LE_HBa_037_O11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
744 trimmed for vector and quality, 854 raw
Genbank Accession
DU076288
Sequence
>LE_HBa0037O11_T7_80949 (raw untrimmed)
ACCCGGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGATAGTAACTGTTAGGTTCTGTGATTTGATAAACTGACTCCAAGAAGAATTGATTA
GATGTTGAAATCTCAGTATGAGATAGACCAGTAGAGGGGATTGGTGCAGCAAAACAAAATTCAGAGACGGGACTAAGAAACATATTGTTGCAAAAATAAT
CTTGAAGATGAACTGGTTTAATTCCTTTATTTGATCTTTCTGATCTTCTTAAAGGAAGAAAAGTAGTGGGTAAATTAGAATCAGGTATAAAGGATGATTT
AAGAGAAGAACAGTTTTGAAGTGGAGATGCAGAAATTGGAGAGTCTGAAGGGAGAGAATCTGGAGAAGAAATGTTAGGAACTGGAACATCACAAGTAGAA
TCATTGACACTAGAATAGGGAGTAGCAGGATTAGGAAAAAATAGAAGTAGAAATAGGAGAAGTAACAATGAAGGGGAAAATAGTTTCAAAGAAAGAGACA
TCTCTTGATATGATTATTCTTTGGCTATCCAATTCGAGGACTTTGTATCCCTTTTTATTTGAGGGATATCCAAGGAAAACAAGCCTTAGCTCTTGGTTCA
AACTTGCCCCTTCCATGAGAAATAGTGCCAGCATAACATAAGCATCCAATGCACTTTAAACCATCATAATTTGGTGCTTTTCCGTGAAGTATTTGATAAG
GTGTGATTCCATGAAATACTCTAGAAGGTAATCTGTTTATTAGGAAAGTTGCAGTAAAAATGTACTCCCCCTAGTAGGCTAAAGGGAATTGAGCCTGAAA
CAGCAGTGCTCTAGCCATTTCAAGTAAATTGGTCAAGGCCTTCCTTTCCCACAA
>LE_HBa0037O11_T7_80949 (trimmed for quality and cloning vector)
AGCTTGATAGTAACTGTTAGGTTCTGTGATTTGATAAACTGACTCCAAGAAGAATTGATTAGATGTTGAAATCTCAGTATGAGATAGACCAGTAGAGGGG
ATTGGTGCAGCAAAACAAAATTCAGAGACGGGACTAAGAAACATATTGTTGCAAAAATAATCTTGAAGATGAACTGGTTTAATTCCTTTATTTGATCTTT
CTGATCTTCTTAAAGGAAGAAAAGTAGTGGGTAAATTAGAATCAGGTATAAAGGATGATTTAAGAGAAGAACAGTTTTGAAGTGGAGATGCAGAAATTGG
AGAGTCTGAAGGGAGAGAATCTGGAGAAGAAATGTTAGGAACTGGAACATCACAAGTAGAATCATTGACACTAGAATAGGGAGTAGCAGGATTAGGAAAA
AATAGAAGTAGAAATAGGAGAAGTAACAATGAAGGGGAAAATAGTTTCAAAGAAAGAGACATCTCTTGATATGATTATTCTTTGGCTATCCAATTCGAGG
ACTTTGTATCCCTTTTTATTTGAGGGATATCCAAGGAAAACAAGCCTTAGCTCTTGGTTCAAACTTGCCCCTTCCATGAGAAATAGTGCCAGCATAACAT
AAGCATCCAATGCACTTTAAACCATCATAATTTGGTGCTTTTCCGTGAAGTATTTGATAAGGTGTGATTCCATGAAATACTCTAGAAGGTAATCTGTTTA
TTAGGAAAGTTGCAGTAAAAATGTACTCCCCCTAGTAGGCTAAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.940751
Expected error %
0.609822
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD25646.1| Score 77 E Value 8e-20 Identity 51.50% Align. Length 306bp (41.13%) Frame 3
putative retroelement pol polyprotein [Arabidopsis thaliana] pir||E84589 probable retroelement pol polyprotein [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA72989.1| Score 77 E Value 7e-22 Identity 51.50% Align. Length 306bp (41.13%) Frame 3
unnamed protein product [Brassica oleracea] pir||T14517 hypothetical protein 1 - wild cabbage transposon Melmoth
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0037O11
Clone
Clone name
hba-37o11
LE_HBa0037O11
C08HBa0037O11
P037O11
Clone type
BAC
Contamination
none
Estimated length
117,116
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found