Clone Read LE_HBa0069E09_T7_83537

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0069E09_T7_83537
Primer
T7
ID from Seq. Facility
LE_HBa_069_E09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
680 trimmed for vector and quality, 927 raw
Sequence
>LE_HBa0069E09_T7_83537 (raw untrimmed)
CATGACTGGGTCCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCACAAAGACTCCTAGAGAGCCAATGAAAGTGCGGTTGGAAATGGTCCA
TACGGATGTTTGGGGACCATCTCCAGTATCATCACTTGGAGGATCCAGATTCTATGTTACCTTCATTGATGATTTCAGCAGGAAGGTACGGGTTTACTTC
TTGAAGCATAAGTTAGATGTGTTTGCAACTTTCAAGAAGTGGAAAGCTGAAGTTGAGAATCAGAGCGGTTTGAAAGTCAAATGCCTAAGGTCTGACAATG
GAGGAGAGTATGACAAATTAGAGTTCAAGGCATTCTGTGCAGCTGAGGGAATCAGATTGATGAGAACGGTTCCTGGTAAGGCAAGGCAGAATGGAATTGC
TGAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACATTGTGGGCTGCCCAAAACACTTTGGGCGGATGCTGTGAGCACAGTTGCA
TACTTGATCAACAGGGGACCATCAGTTCCTTTAGAGTTCAAGATTCCAGAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTG
GTTGCACTGCTTATGTTCATGTTGATCCAGAAAAGAGAGACAACCTTGATGCCAAGGCTGTGAAGTGTTACTTCATAGGCTATTGGTTCTGATTTTGTTG
GTTACAGGTTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACATGACATTTTATGAATCTTGCCTGTACAAGGATAAAGAGTTAAAGGTTT
TAGAAATCACAAATACCGTGGAGATTGATGTTGAATTGGAATAAATTGCCCCCCTATATATTCTTATCCATTCTTAAACCCCTCTCCCACGTAAATTAAC
AAATCACTAGTTCGAGCTAAATAGAGA
>LE_HBa0069E09_T7_83537 (trimmed for quality and cloning vector)
AGCTTCACAAAGACTCCTAGAGAGCCAATGAAAGTGCGGTTGGAAATGGTCCATACGGATGTTTGGGGACCATCTCCAGTATCATCACTTGGAGGATCCA
GATTCTATGTTACCTTCATTGATGATTTCAGCAGGAAGGTACGGGTTTACTTCTTGAAGCATAAGTTAGATGTGTTTGCAACTTTCAAGAAGTGGAAAGC
TGAAGTTGAGAATCAGAGCGGTTTGAAAGTCAAATGCCTAAGGTCTGACAATGGAGGAGAGTATGACAAATTAGAGTTCAAGGCATTCTGTGCAGCTGAG
GGAATCAGATTGATGAGAACGGTTCCTGGTAAGGCAAGGCAGAATGGAATTGCTGAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGA
TACATTGTGGGCTGCCCAAAACACTTTGGGCGGATGCTGTGAGCACAGTTGCATACTTGATCAACAGGGGACCATCAGTTCCTTTAGAGTTCAAGATTCC
AGAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCACTGCTTATGTTCATGTTGATCCAGAAAAGAGAGACAACCTT
GATGCCAAGGCTGTGAAGTGTTACTTCATAGGCTATTGGTTCTGATTTTGTTGGTTACAGGTTTTTGGGATGACAAGAAC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.951152
Expected error %
0.26286
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA32025.1| Score 236 E Value 4e-61 Identity 18.60% Align. Length 596bp (87.65%) Frame 2
unnamed protein product [Nicotiana tabacum] sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Contains: Protease ; Reverse transcriptase ; Endonuclease]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK29467.1| Score 233 E Value 3e-60 Identity 18.60% Align. Length 596bp (87.65%) Frame 2
polyprotein-like [Lycopersicon chilense]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0069E09
Clone
Clone name
hba-69e9
LE_HBa0069E09
C08HBa0069E09
P069E09
Clone type
BAC
Contamination
none
Estimated length
125,749
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found