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Clone Read LE_HBa0075J08_SP6_85310

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0075J08_SP6_85310
Primer
SP6
ID from Seq. Facility
LE_HBa_075_J08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
509 trimmed for vector and quality, 909 raw
Sequence
>LE_HBa0075J08_SP6_85310 (raw untrimmed)
CCGGAGATTTAAGGAACTTTCCCTAATCACTCGAGACAGCCGATAAAAGTTGCAAAACATTTACCACGTCGTGGGGTTATGTAGCTACTAGGATTCCCCA
CTTCATACAGAAGCTGCTCAGCACACGTGCAGGGATTCAAAACCCCACCACTGCTTTCCGCCTTTGCTACACATACTTTCCCATCAAAGCTAACTTCCGC
AAAAGGAAGAGATAAATCTAGGAGATCTTGAAGAGATATATCACGGTATTTATCTCCTACAGTGAGAAAATACAGTCAATGAGTTACAGGTGAAGTGACA
TAGAAACAGCATCAGAGTCAAAAGCTCAGAACTATAAGTAAAGCCAAAGATTAGTAGTACTAAATAAAGAGGAACTAAAATTTTTCAAGAACACGGTTCA
ATGGGTTTGAGAAACATAGATGAAAAATAAAGTTCTCAAAGTGCATGCTTACTGGAGCAAGTGGAAGGTAACTCCTCCAACCTCAAGACTCCACCATAAT
ATACAGACATCATACTCCCTACGAAAGAAAGGTGCACATTCCTGAAATATCGCAATACGAACGAAAGGTTCACCTGGATGCATATAGTATCCTCCAGTAA
GTTGGCAACCACATTCTAGCTTGTGGCCAGCCAGTGAACCTTGGGCAAGCAGGTGCAAGTCTTCCCTGTTCCAACTGATCTCAAACACCTGATTTTATTA
TGGACCTTCCAATGTTTTAAATAAAGACAGTTCCACTAATTTCCATATTTTTGCAACCGCTCCATATTGGCAAAGATAGTTATGTAGAACTAAGAACTTC
CCCCAAGAAAGAGACGCAAAGGAGAATTATGAGAAGAGTCAATTGCCCTTTCACTTTCACAATTCTCACGCAGTCCTCTTTGGATATTCGCCGCTCATGG
TGGTGAGCC
>LE_HBa0075J08_SP6_85310 (trimmed for quality and cloning vector)
GAGACAGCCGATAAAAGTTGCAAAACATTTACCACGTCGTGGGGTTATGTAGCTACTAGGATTCCCCACTTCATACAGAAGCTGCTCAGCACACGTGCAG
GGATTCAAAACCCCACCACTGCTTTCCGCCTTTGCTACACATACTTTCCCATCAAAGCTAACTTCCGCAAAAGGAAGAGATAAATCTAGGAGATCTTGAA
GAGATATATCACGGTATTTATCTCCTACAGTGAGAAAATACAGTCAATGAGTTACAGGTGAAGTGACATAGAAACAGCATCAGAGTCAAAAGCTCAGAAC
TATAAGTAAAGCCAAAGATTAGTAGTACTAAATAAAGAGGAACTAAAATTTTTCAAGAACACGGTTCAATGGGTTTGAGAAACATAGATGAAAAATAAAG
TTCTCAAAGTGCATGCTTACTGGAGCAAGTGGAAGGTAACTCCTCCAACCTCAAGACTCCACCATAATATACAGACATCATACTCCCTACGAAAGAAAGG
TGCACATTC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.961663
Expected error %
0.125549
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g01770.1 Score 89 E Value 2e-18 Identity 19.40% Align. Length 200bp (39.29%) Frame 2
68414.m00096 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAC41831.1| Score 89 E Value 7e-17 Identity 19.40% Align. Length 200bp (39.29%) Frame 2
unknown protein [Arabidopsis thaliana] ref|NP_171682.2| expressed protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF78410.1| Score 89 E Value 7e-17 Identity 19.40% Align. Length 200bp (39.29%) Frame 2
ESTs gb|AI993141, gb|T44787 and gb|T44786 come from this gene. [Arabidopsis thaliana] pir||C86149 T1N6.18 protein - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0075J08
Clone
Clone name
hba-75j8
LE_HBa0075J08
P075J08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found