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Clone Read LE_HBa0075J08_T7_85311

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0075J08_T7_85311
Primer
T7
ID from Seq. Facility
LE_HBa_075_J08-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
405 trimmed for vector and quality, 723 raw
Sequence
>LE_HBa0075J08_T7_85311 (raw untrimmed)
TTATATTTATTAAAAGGATCTGAATTAACGCTTACAATTTCCTTAACACATAGGGCGAGAAATACTAAAAGTCTCGGAAATTTCTCATACTCGTTCAGAA
TTCTAAACAAATATTCCATCATCACTAGCACAAATAGTAATGGTGAAACAGGGTCCCCTTGCCTAAGCCCCCTGTTACCAACAAAAACCCATGGTTTTCA
CCATTCACTTTGACTGAAAAATTTAGAGTTGTTACACAGATCATAATCCATTTGACAAACTCCCCAGGAAACCTAAATCCGATCAACATCTCCTCTAAGA
ACTCCCAACTAACCATGTCATAAGCTTTCCTCAAATTTATTTTCATTATGCATCTTGGAGAAGCACTTTTCCTATTATAGTGTCTTAATAGGTCATGGTA
AATAAACACATTATGCATCATAGATCTGCCTTCCACTAATGCAGATTGATTTGTTGCTACTATATGATTGATTGCTTTACTTACTCTGCTACAAGTCATT
TTTGGTATGATCTTATAGATGACATTACACCATGAAATACCGTAACATTATTGTGAAGAGATAAAAAATTGTATGAATTGATTTCCTTCAATATTGTTAT
AAAGTTTGTTAATCAAACATACTTCTAACATCATCTAAATCTAATAGCTATACAATCAACATCCCTATCAGAATCATAATATGATTTCATTAATATCACA
ATCACCTAAACATGTACATAAAA
>LE_HBa0075J08_T7_85311 (trimmed for quality and cloning vector)
AATTTCTCATACTCGTTCAGAATTCTAAACAAATATTCCATCATCACTAGCACAAATAGTAATGGTGAAACAGGGTCCCCTTGCCTAAGCCCCCTGTTAC
CAACAAAAACCCATGGTTTTCACCATTCACTTTGACTGAAAAATTTAGAGTTGTTACACAGATCATAATCCATTTGACAAACTCCCCAGGAAACCTAAAT
CCGATCAACATCTCCTCTAAGAACTCCCAACTAACCATGTCATAAGCTTTCCTCAAATTTATTTTCATTATGCATCTTGGAGAAGCACTTTTCCTATTAT
AGTGTCTTAATAGGTCATGGTAAATAAACACATTATGCATCATAGATCTGCCTTCCACTAATGCAGATTGATTTGTTGCTACTATATGATTGATTGCTTT
ACTTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.933361
Expected error %
0.427587
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC63678.1| Score 94 E Value 5e-21 Identity 44.30% Align. Length 370bp (91.36%) Frame 1
putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] pir||H84629 hypothetical protein At2g23880 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB78261.1| Score 94 E Value 9e-21 Identity 43.60% Align. Length 358bp (88.40%) Frame 1
putative reverse transcriptase [Arabidopsis thaliana] emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana] pir||T48128 probable reverse transcriptase - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0075J08
Clone
Clone name
hba-75j8
LE_HBa0075J08
P075J08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found