Clone Read LE_HBa0093H07_SP6_85980

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0093H07_SP6_85980
Primer
SP6
ID from Seq. Facility
LE_HBa_093_H07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
652 trimmed for vector and quality, 949 raw
Sequence
>LE_HBa0093H07_SP6_85980 (raw untrimmed)
CCCCGGTTATCGGAGTTGAAAAAGAGATTGACTACCGCTCCAGTTTTGACCTTATCAGCGGGTACTTAAGCTTTCGTTGTTTATTGTGATGCATCACGAG
TTAGCCTGGGCTGTGTATTGATGAAGAATGGCAAGGTTATGGCTTATGCCTCTAGACACTTGAAGATTCATGAGAAGAATTATCCAGCTCATGACATAGA
ATTGGTTGCAGTATTGTTTTCTTTGAAATATGGTGCCACTACTTGTATGGTATTCATGATGACATATTCCCTGACTACAAGAGCCTTTAATATGTGTTCA
CTCAGAAAGAACTCAATCTCAGATAGATAAGGTGGTTGGAATTACACAAGGATTACGACATGAGTATTCTTTTCCACTCAAGTAAGGCTAATGTGGTTGT
TGATGCCTTAAGCATGTTGCCCATGGGAAGTACTTCCCATGTCGAAGAAGGAAAAAGGGAGTTAACAAAAGATGTTCATAAACTTGCACGTTTCGGAGTC
AGACTGATGGATTCCGCAGAAGCATGAATAGTGGTGACCAATGGGTTTGAGTCATCATTAGTGTCAGACGTGAAAGAGAATCAAGACCAAGACCCTATTC
TTCTTGAATTAAAGGTGTATGTTCATAAGCAAAGAGTGTTAGCCAAGATCTCGAAAGAAACATGATTTCTATTTGGGTGATTTTTGATAGAAATGGACAA
AGTCCTCCCATTTCTCGATGGTAAAGACTACTTATTCGGGCGAGGATTATGCCCAAGTGTACCTTTCAGGAATGGGAAGACTTCCTGGAGTTTCCGGATC
CATTATTTTAAAAAGAGGGGCAAAATTTACTCCCCATTTCCGGAAATCCTTCCAGAAAGGTTGGGGTTCAAAGTGAACTTAAGCACTACTTTTCTTCCCC
GCGAATGTGAAGGGGGAGGGTCCTAACCGACCCTAAAAAATGAGTGGAG
>LE_HBa0093H07_SP6_85980 (trimmed for quality and cloning vector)
ATTGACTACCGCTCCAGTTTTGACCTTATCAGCGGGTACTTAAGCTTTCGTTGTTTATTGTGATGCATCACGAGTTAGCCTGGGCTGTGTATTGATGAAG
AATGGCAAGGTTATGGCTTATGCCTCTAGACACTTGAAGATTCATGAGAAGAATTATCCAGCTCATGACATAGAATTGGTTGCAGTATTGTTTTCTTTGA
AATATGGTGCCACTACTTGTATGGTATTCATGATGACATATTCCCTGACTACAAGAGCCTTTAATATGTGTTCACTCAGAAAGAACTCAATCTCAGATAG
ATAAGGTGGTTGGAATTACACAAGGATTACGACATGAGTATTCTTTTCCACTCAAGTAAGGCTAATGTGGTTGTTGATGCCTTAAGCATGTTGCCCATGG
GAAGTACTTCCCATGTCGAAGAAGGAAAAAGGGAGTTAACAAAAGATGTTCATAAACTTGCACGTTTCGGAGTCAGACTGATGGATTCCGCAGAAGCATG
AATAGTGGTGACCAATGGGTTTGAGTCATCATTAGTGTCAGACGTGAAAGAGAATCAAGACCAAGACCCTATTCTTCTTGAATTAAAGGTGTATGTTCAT
AAGCAAAGAGTGTTAGCCAAGATCTCGAAAGAAACATGATTTCTATTTGGGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.969754
Expected error %
0.357003
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 194 E Value 2e-48 Identity 66.70% Align. Length 616bp (94.48%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 192 E Value 8e-48 Identity 66.00% Align. Length 616bp (94.48%) Frame 3
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0093H07
Clone
Clone name
hba-93h7
LE_HBa0093H07
P093H07
Clone type
BAC
Contamination
none
Estimated length
77,218
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found