Clone Read LE_HBa0093M16_SP6_86238

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0093M16_SP6_86238
Primer
SP6
ID from Seq. Facility
LE_HBa_093_M16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
155 trimmed for vector and quality, 955 raw
Sequence
>LE_HBa0093M16_SP6_86238 (raw untrimmed)
CCGGCTTTTCCACTTGAATGCTGTGTTGAACTTCCTCTGTAGGAATGTGTCATGGACAACCTTCTGGCCACTCCCTTTATGATTGAATATTCGTTTTTGT
AGGGGTTCTCATCTCTCTTGGTCTCTTTCCCAAAATACCCCTCAAGCTCTGACTCAATCTATTCCAAATAATATGGTTGTTCCCCCTTGCATGTCACTAT
CACTCGCCCCCACTGATCCACACGCTGGGTCTGCTTGCCCAGTAAACTTTAAGCCCGTTTTTTTGGTCATTATTATTTTCATCCTCCTGCGTATAAGACC
GTATTTACGTCCATTTAGTGGATTTTAAAAATACGTTGTCTCTAGTGCAAATAACATCCGAAATGATTTTATCCTCTTTATACACGATAGTATGTGTCAA
AGTAGTCCAGACCTTCTTTTTGTCTGTATCTTTTGACTACCAGTCTAGCCTTATATTTGTCAATAGTTCTGTCAACTTTCATTTTCCTTTTAAAGATCCA
CTTTGGTCCTAAAGGTTTATTTCCTGGACAAACATCAGTCCATTCCCCTGTATGATTACTAAAAATTAATTTGATTTCACTATTGACCAACTTCTTTTCC
AATTAATTAACTCAAACAAAGGCATAACTGCTTTTAAATTTTATCGGCCTCATTTCCACGCAACAGTGCCCCAAGATCTGATCCTATAAACTTGGTTTCC
TTTTGTCGAAAAGCCCCCCCCAACGATCTCCACTCCATAGCCTATATCCGACATATCCCTAAATAAGCACTCTTACTATCTTAATTCCATCTCCTAATAC
ATCTCATACACTTTAATTTGTTATTTTATTAATTGTAATCTATCTCTTTTCTACTTTCATACTGCCTCTTTATCTCTCCCCGTTCCCATAATACACCAAC
TCCGTCTACACGCCCACCCGCCCCCAATACTTACGTCACCACCACCCCTCCCACT
>LE_HBa0093M16_SP6_86238 (trimmed for quality and cloning vector)
TATCCTCTTTATACACGATAGTATGTGTCAAAGTAGTCCAGACCTTCTTTTTGTCTGTATCTTTTGACTACCAGTCTAGCCTTATATTTGTCAATAGTTC
TGTCAACTTTCATTTTCCTTTTAAAGATCCACTTTGGTCCTAAAGGTTTATTTCC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.9048
Expected error %
1.28161
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38766.1| Score 87 E Value 1e-16 Identity 30.40% Align. Length 134bp (86.45%) Frame 1
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE05248.2| Score 70 E Value 1e-11 Identity 22.00% Align. Length 149bp (96.13%) Frame 1
OSJNBb0115I09.10 [Oryza sativa (japonica cultivar-group)] ref|XP_471468.1| OSJNBb0115I09.10 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0093M16
Clone
Clone name
hba-93m16
LE_HBa0093M16
P093M16
Clone type
BAC
Contamination
none
Estimated length
181,123
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found