Clone Read LE_HBa0120F17_SP6_87440

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0120F17_SP6_87440
Primer
SP6
ID from Seq. Facility
LE_HBa_120_F17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
625 trimmed for vector and quality, 858 raw
Sequence
>LE_HBa0120F17_SP6_87440 (raw untrimmed)
GTTCCGGGTGTCCAGCGTCAGTCCCGAGGGGCCTGAAATAAATAGGCTTAGTTTTTCTTCACTTGAATCACAATTACGAGAATCTAGATTTGAGTGAATC
TAGGTTTGAGTATCTTGTCCTAAGAAAAAAATGAATACATCCCACAGTAAGAGCTTTCAATCAATTTGTATTGCTTGTGCTTGCAGCACACAAGTGATTT
TTTTCTTACAATCAATGGTTGAGTTATTGTGTAAACACGAAACACAGTAATGTTTGATTCATTTTTTGCCCCATAGAAGTGGATCTTTGTTTATCCAAAC
TTCGTCAAATACATCCATTAAAGCAGATGTTAAATAGTTAGGTTAAGCAAGTGCCATTCCAAAAATCGTATAAAGTTGGGACAGACCATAGAAACTTAGA
AAATAACCACCATCAGGATAGTTGGTCAAATAGCAGAAATAAAGGAAATGTCTTACAAGAGAAACCATAAAAAGGAAACAGAAAGCAAAAAACAACAGGT
CTTAGCAAACAGGCCAAGAAACTGGAAATAGAACAAAATGAACCCCAATTCAAAATTGATTTCCATTTTAACCAACACTAACTCATTTGTAAAATTTACT
TTAACTTGAATTCAAGTTTTAACTGCATCATCTTCGTTCAACATTGTCTATTGGATTAAGTCCCTCGTCAGGTTCATCATCTATATCAGCTTCTTTGGAA
TTGTTGGATTTCATGAAAAAGGATATTCTTTAATCAGGCTCACTGGTAGACCATCTCTTTTAAATTTGAAACAGCCCTTTCCAGGTCAAAAATCTTTTTT
GTTTGTCAATTTAATTTCTTAATTCTTTTCTGTACTCCTACAAAAAACTTCATTTACA
>LE_HBa0120F17_SP6_87440 (trimmed for quality and cloning vector)
GCGTCAGTCCCGAGGGGCCTGAAATAAATAGGCTTAGTTTTTCTTCACTTGAATCACAATTACGAGAATCTAGATTTGAGTGAATCTAGGTTTGAGTATC
TTGTCCTAAGAAAAAAATGAATACATCCCACAGTAAGAGCTTTCAATCAATTTGTATTGCTTGTGCTTGCAGCACACAAGTGATTTTTTTCTTACAATCA
ATGGTTGAGTTATTGTGTAAACACGAAACACAGTAATGTTTGATTCATTTTTTGCCCCATAGAAGTGGATCTTTGTTTATCCAAACTTCGTCAAATACAT
CCATTAAAGCAGATGTTAAATAGTTAGGTTAAGCAAGTGCCATTCCAAAAATCGTATAAAGTTGGGACAGACCATAGAAACTTAGAAAATAACCACCATC
AGGATAGTTGGTCAAATAGCAGAAATAAAGGAAATGTCTTACAAGAGAAACCATAAAAAGGAAACAGAAAGCAAAAAACAACAGGTCTTAGCAAACAGGC
CAAGAAACTGGAAATAGAACAAAATGAACCCCAATTCAAAATTGATTTCCATTTTAACCAACACTAACTCATTTGTAAAATTTACTTTAACTTGAATTCA
AGTTTTAACTGCATCATCTTCGTTC

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.945902
Expected error %
0.336482
Sequence Annotations 
Automatic Annotations
Nicotiana tabacum Chloroplast (screening/organelle/nicotiana_tabacum_chloroplast)NCBI BLAST
gi|11465934|ref|NC_001879.1| Score 98 E Value 4e-22 Identity 95.10% Align. Length 60bp (9.60%) Frame 1
Nicotiana tabacum plastid, complete genome
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0120F17
Clone
Clone name
hba-120f17
LE_HBa0120F17
P120F17
Clone type
BAC
Contamination
none
Estimated length
120,595
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found