Clone Read LE_HBa0120F17_T7_87441

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0120F17_T7_87441
Primer
T7
ID from Seq. Facility
LE_HBa_120_F17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
665 trimmed for vector and quality, 835 raw
Sequence
>LE_HBa0120F17_T7_87441 (raw untrimmed)
CTGGGTACCCGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCAATTAACCCATAATGACATATAAATAAGTTTTTTTTCTAAACGAAAAGGA
CATTAATAAACCAAATTTTAACATATGCCATAAATAAAAAAAATTCAATGTTTTTGTGGTATATTTAGTTTCGTTTCCCAAATTTTAATTGATTTAATAA
AGGAAAAATTGTATATAATAGCAAACTAATAACCTAAAATAAATGGAATAGCTAGGGTTTGATTTAATTGTGCTCCATAACAAACGTTAACTAAAATTTG
CCAGCGTCTCTCTCCCAGAAATCTCGCTCGCCACTCTCTATTCTCGCTTGCCTCTCTCACTTTATACACATAAGTGTATAATTCTGTTTCTGTTTTGTAT
AAAGCGAGAGAAAATTGTATATACACATGAAAAAATATATCTTCGTGTTATACACTTATTTATACAATTTACAAACATTTTACTTCAAATATTGCAGAGA
AAAAGGTCAACGAATAATACAATTGCGAATTATTCTTCAATAGTTCATCTATATGCATTTTGAATTCTTCTAAATTATCAAAATTATATTTTAATGGTTT
TTGTGTTATTATACTATTTTCATCTATTAATTCAATTTTTACTTTCATCTTTATGTTTTTCCCATCCTTGTAATGAATTTTCACTATATAATAATTCTTG
TTGTTCGTTAATTATTCTAACTCTATCTTTTGTAAGTATGATAATTTCTAATTTGTGCTATTTTGATTTTTACTTTTATATTCCCAGTCCCTGGGTATTT
TTTTTAACTTTCCTTATAATTCCATTTTTTGGGGT
>LE_HBa0120F17_T7_87441 (trimmed for quality and cloning vector)
AGCTTTCAATTAACCCATAATGACATATAAATAAGTTTTTTTTCTAAACGAAAAGGACATTAATAAACCAAATTTTAACATATGCCATAAATAAAAAAAA
TTCAATGTTTTTGTGGTATATTTAGTTTCGTTTCCCAAATTTTAATTGATTTAATAAAGGAAAAATTGTATATAATAGCAAACTAATAACCTAAAATAAA
TGGAATAGCTAGGGTTTGATTTAATTGTGCTCCATAACAAACGTTAACTAAAATTTGCCAGCGTCTCTCTCCCAGAAATCTCGCTCGCCACTCTCTATTC
TCGCTTGCCTCTCTCACTTTATACACATAAGTGTATAATTCTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGAAAAAATATATCTT
CGTGTTATACACTTATTTATACAATTTACAAACATTTTACTTCAAATATTGCAGAGAAAAAGGTCAACGAATAATACAATTGCGAATTATTCTTCAATAG
TTCATCTATATGCATTTTGAATTCTTCTAAATTATCAAAATTATATTTTAATGGTTTTTGTGTTATTATACTATTTTCATCTATTAATTCAATTTTTACT
TTCATCTTTATGTTTTTCCCATCCTTGTAATGAATTTTCACTATATAATAATTCTTGTTGTTCGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.901163
Expected error %
0.348881
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC88794.1| Score 71 E Value 6e-16 Identity 82.50% Align. Length 174bp (26.17%) Frame 1
putative polyprotein [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB42622.1| Score 70 E Value 3e-15 Identity 84.60% Align. Length 177bp (26.62%) Frame 1
putative polyprotein (aspartic proteinase, reverse transcriptase, ribonuclease H) [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0120F17
Clone
Clone name
hba-120f17
LE_HBa0120F17
P120F17
Clone type
BAC
Contamination
none
Estimated length
120,595
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found