Clone Read LE_HBa0029B20_SP6_91862

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0029B20_SP6_91862
Primer
SP6
ID from Seq. Facility
LE_HBa_029_B20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
10 trimmed for vector and quality, 1250 raw
Sequence
>LE_HBa0029B20_SP6_91862 (raw untrimmed)
GGCGGCGTGAGAGATATTCTACCTGCACAGGATTCGAACTACTTCGAGAGAATCCACTCGCGAGATACTCGTAGTCTTCCGACATGATCGTCTCACTATA
AGCTCGACGCTGCGCACTCATCTATTATATACCTGTGACCTGATCGTTATTTCACACACCGTACATTAGTACTAGGGCTCTCTACTCTGTATGCAGCATA
GCAACATAGGTTTACGTTCTCACTATGGCACGTCAACATACCTCTCCATTTACGCACAAGCATAGGCAGGTAAAAAGAACATATATCAGGTCCTCTTCTA
CACTGACTCAGCGCCATTGCACCCAACTCATATGTCCGCCAGCTCTAGTAAATGTGTCTGAATAGGACGGCCTAGAATTGTCGTGATATGTCTTCCTACC
TATATCGACATACTTGATGACGTGATATACACAACTACTCAGCAATATTGGATAGCTTCTACTACATGTAACTATATCTAGCCTGCTAGATTGCCAGCTA
TAAGTATAATGTCACAGCCACACCGACACACTCCGCCATATCACCACGACTGTACTGCAGAAACCTCCGTAGACGCGCACTGCACTGCATAATAGTATAC
ATTGCAGATATCAGAGACATAGCAATATATCTAGAGATATATAGAGCCGTAGTGACACTTCAGCTACTGTCGCATTTCGTAGCTAAATCACCCTGGATCT
TATGAATCCCCACCATACGGAGAACACAGAATCGTAGTACCCATATAGCCCTAACGCAACATGGGAGCTCTCATGACCGTTTGACATTTTGCTCAGTCCC
ACCCCCTATTGGTGATAAATATAGACAGCTTACTCCACATTGTTAGATTACGATACGACTCGGTAATACTCCTCTTTTTCACCTGGTACCCATTCCAACA
TAAATAGAACATTCAAAGCTTCCGCCATCGCTACTCTTACATACATTTCTTGGCGTCCTTTAATCATCAACCAAAGCATAATTCCCTGCATCCATCATAT
ACAATATTCCCACTAACCTTCATAATCTAAAAACCTTGCAGATGAACTTAGACTCACAGATCATTAATACTCTTCCTATCGCACCAATCAGGTCTCTCTG
CACCTTACGTGAGGTCCAGGCTAAGATTACTGAATAGACGAGCTGTGTGTCTCGGAAGGACTGATTCTAGTCTGATTTCAATAATATTTATTATTTTTAT
TGTATACGTGTCTCTGATGACTAAATCAATTGTTCAATCGGTGGTTGTGG
>LE_HBa0029B20_SP6_91862 (trimmed for quality and cloning vector)
GCGCCATTGC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.412804
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0029B20
Clone
Clone name
hba-29b20
LE_HBa0029B20
P029B20
Clone type
BAC
Contamination
none
Estimated length
104,191
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found