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Clone Read LE_HBa0129J01_T7_98353

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0129J01_T7_98353
Primer
T7
ID from Seq. Facility
LE_HBa_129_J01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
800 trimmed for vector and quality, 862 raw
Genbank Accession
DU056647
Sequence
>LE_HBa0129J01_T7_98353 (raw untrimmed)
CCTAAACTGGAACCGCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAGGTGGAAATACGCAAAAATTCATTTGGTATTGATGCTAAGCCTCC
CTTCAACTTAAGCTTGACCATATGACTCAACTTAGATAAACCAGCAACCAAATATATTTTCCTGCTACCCTCTACTTCCAAACACAAGGATTGAAGGCTC
TTAAGCTCTGCAAGTGAATTACATAATTGATTCATGTCTAGGTTATCAGCACTTCCAATGAGAAAACCAACTTTTTGGAGCTGAGTCATTCTAGTCAGGT
TTTTATGGTGCATCCAGTGATGAACAGGTATGCTGCCTAGAGTTTGGAGATTGTTAGGTAGGTCAATCTTCAATAGGCTGGGGGAATTTATGTAACCAAG
TATATGCCGTAAGTTCTCTAACTTCCATAAGACATTAGGAACTTTCACAGAATAAAACCTAGACATGGGCATATCTATTGTTTCCAAGTTTTGCAGACGA
CTTATCGAATGGGGAAACTTCTTAATACATGTCTTCCATCCTATGCCTAAGTACTTCAAGGAACATAGTTTCCCAATACTATCTGAGATCACATTTAAAC
CAGGAGAGTCTATGTATAGCACTTTGAGAAGTTTGAAACTACTTGTACAAATACACTTTAGGTTAACTAGTTTAGCAGATGAATCAAAGCATAGAAGGGA
TCTTATATACGATTTTGAATTTCCCAAATATTCGTACCTCTCGAGTGGAGTATAAAGGACACGGTGCCAAGATTCAGAGAGGGATATAGATGGATTATCT
ACCTCGAGAAACATTTCTTCCTTGGCCTGCATTATATAAAAGTCTCGTAGGAGATCATGGAG
>LE_HBa0129J01_T7_98353 (trimmed for quality and cloning vector)
AGCTTAGGTGGAAATACGCAAAAATTCATTTGGTATTGATGCTAAGCCTCCCTTCAACTTAAGCTTGACCATATGACTCAACTTAGATAAACCAGCAACC
AAATATATTTTCCTGCTACCCTCTACTTCCAAACACAAGGATTGAAGGCTCTTAAGCTCTGCAAGTGAATTACATAATTGATTCATGTCTAGGTTATCAG
CACTTCCAATGAGAAAACCAACTTTTTGGAGCTGAGTCATTCTAGTCAGGTTTTTATGGTGCATCCAGTGATGAACAGGTATGCTGCCTAGAGTTTGGAG
ATTGTTAGGTAGGTCAATCTTCAATAGGCTGGGGGAATTTATGTAACCAAGTATATGCCGTAAGTTCTCTAACTTCCATAAGACATTAGGAACTTTCACA
GAATAAAACCTAGACATGGGCATATCTATTGTTTCCAAGTTTTGCAGACGACTTATCGAATGGGGAAACTTCTTAATACATGTCTTCCATCCTATGCCTA
AGTACTTCAAGGAACATAGTTTCCCAATACTATCTGAGATCACATTTAAACCAGGAGAGTCTATGTATAGCACTTTGAGAAGTTTGAAACTACTTGTACA
AATACACTTTAGGTTAACTAGTTTAGCAGATGAATCAAAGCATAGAAGGGATCTTATATACGATTTTGAATTTCCCAAATATTCGTACCTCTCGAGTGGA
GTATAAAGGACACGGTGCCAAGATTCAGAGAGGGATATAGATGGATTATCTACCTCGAGAAACATTTCTTCCTTGGCCTGCATTATATAAAAGTCTCGTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.970715
Expected error %
0.390276
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_476922.1| Score 84 E Value 6e-15 Identity 11.10% Align. Length 641bp (80.12%) Frame 2
putative disease resistance protein RPR1 [Oryza sativa (japonica cultivar-group)] dbj|BAC79938.1| putative disease resistance protein RPR1 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT09451.1| Score 70 E Value 7e-11 Identity 10.30% Align. Length 632bp (79.00%) Frame 2
putative NBS-LRR type disease resistance protein [Prunus persica]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0129J01
Clone
Clone name
hba-129j1
LE_HBa0129J01
P129J01
Clone type
BAC
Contamination
none
Estimated length
72,623
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found