Sol Genomics Network

Unigene SGN-U580021

Unigene Basic Information

Unigene ID:	SGN-U580021
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1319 bp

>SGN-U580021 Tomato 200607 #2 (41 members)
GGCAATACCCATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAG
AAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTA
TCTATTTCAACCTACAGTGACACTGGAGTGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAA
TACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCA
ACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACA
GCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAG
ACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGGGTGACAAAGGG
GACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAAT
GAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCT
CTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGT
GTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAAT
AAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTAT
TTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATA
TGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTTTTTTGGT
AATTGTTTGCTGTGACTGGATAATTTTTCATCCTTTATGAAGTGAATAAGTTCTAGCCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc02g092440	Solyc02g092440

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	LeMiToLf01	leaf	30679	3
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	7
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (41)

Alignment image suppressed for unigene with 41 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312769	Tomato 200607 #1
SGN-U333901	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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