Sol Genomics Network

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Unigene SGN-U268804

Unigene Basic Information

Unigene ID:	SGN-U268804
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268804
mRNA sequence:	Length: 1108 bp

>SGN-U268804 Solanum tuberosum #4 (26 members)
TCAAAATGAGGCTTTCTGAATTCACTACTCTTTTCTTACTATTTTCTGTGCTTTTGCTGTCTGCCTCGGCAGAGCAGTGTGGTTCACAGG
CTGGAGGCGCACTTTGTGCCTCGGGACTCTGTTGCAGCAAATTCGGCTGGTGTGGTAACACTAATGATTATTGTGGTCCTGGTAATTGTC
AGAGTCAGTGTCCTGGCGGTTCTCCAGGGGACCTTGGCGGTGTCATCTCAAATTCCATGTTTGATCAGATGCTTAATCATCGCAATGATA
ATGCTTGTCAAGGAAAGGGTAATTTCTATAGTTACAATGCCTTCATCAGTGCTGCTGGGTCTTTTCCTGGATTTGGTACTACTGGTGATA
TCACTGCCCGTAAAAGGGAAATTGCTGCTTTCTTTGCCCAAACTTCCCATGAAACTACTGGAGGATGGGCTTCAGCACCTGATGGACCAT
ACGCATGGGGTTACTGCTTCCTTAGAGAGCAAGGTAGCCCGGGCGATTACTGTACACCGAGTAATCAATGGCCTTGTGCTCCTGGAAGGA
AATATTTCGGACGAGGCCCAATCCAAATTTCACACAACTACAACTATGGGCCATGTGGAAGAGCCATCGGAGTGGACCTTTTAAACAATC
CTGATTTAGTAGCCACAGACTCAATCATCTCATTCAAATCAGCTATCTGGTTCTGGATGACACCTCAATCACCAAAGCCTTCTTGCCACG
ATGTCATCACTGGAAGATGGCAACCATCTGGCACTGACCAAGCAGCTAATCGTGTCCCTGGATTCGGTGTCATCACAAACATCATCAATG
GTGGCCTGGAATGTGGTCATGGAAGTGACAGCAGGGTCCAGGACCGAATTGGATTTTACAGGAGGTATTGTGGAATTCTTGGAGTTAGTC
CTGGTGACAATCTTGATTGTGGCAACCAGAGGTCTTTTGGAAACGGACTCTTAGTCGATACTGTGTAATGATCGACTTCATCATATAAGG
CCCAACTATAAATAAATTTATGTATGTACGAAATTGTATGAATTGTGATTGTAATATGATGGGACCACGACTTATAATTGTTTGTTTTTA
TAATAAACAAAGACTATTGTTCTTCTTC

[Blast] [AA Translation]

Associated Loci (5)

Locus symbol	Locus name	Gene activity
chtb2	chitinase	chitinase
chtc1	class 1 chitinase
chta2	class 2 chitinase
chtc2	class 1 chitinase (ChtC2) gene
chta1	class 2 chitinase (ChtA1)	chitinase

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	PPC	leaf 6 week old	5062	12
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	vSTmRNA		708	4

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	214	Glyco_hydro_19	69
2	22100	Glyco_hydro_19	67
5	56383	Glyco_hydro_19	53
1.1	101487	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	104
2	118520	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	68
5	129037	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	54

Preceding Unigenes (1)

Unigene	Build
SGN-U243656	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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