Sol Genomics Network

Unigene SGN-U271319

Unigene Basic Information

Unigene ID:	SGN-U271319
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271319
mRNA sequence:	Length: 1668 bp

>SGN-U271319 Solanum tuberosum #4 (12 members)
GCTCTTTCCAAGAATGAAAAAAGAAAAAGTCTACTACTAGTCTTCTCACTTGAATCATTTCTACTAGTTTTGTTACTGTTTTCAATTATT
ACATCTTCATTATCTGAGATCTTCTTTGAAGAACAATTTGATGATGATTGGCAGAGCAGATGGGTGAAGTCTGACTGGAAAAGGAGTGAA
GGGAAAGCAGGCTCCTTTAAGCATACAGCTGGGAAATGGGCTGGTGATCCTGATGATAAAGGTATTCAGACGTCAAGTGATGCCAAACAT
TTCGCCATCTCTGCTAAGATACCAGAATTTAGTAACAAGAATAGAACATTGGTTGTACAGTACTCTATAAAGCTTGAGCAAGACATTGAA
TGTGGTGGAGGTTACATAAAGCTTCTCTCTGGATATGTCAACCAGAAGAAATTCGGGGGAGACACTCCTTACAGTATGATGTTTGGACCG
GATATCTGTGGTACACAGACTAAGAAACTTCATGTTATACTTTCCTACCAAGGCCAGAATTATCCAATCAAAAAGGATCTACAATGTGAA
ACAGACAAATTAACCCATTTCTACACATTCATTCTTAGACCTGATGCATCATACAGCATCTGGATTGATGGTCGAGAAAGGGATTCTGGA
AGCATGTATACAGACTGGGATATCTTTCCTCCTCGAAAAATTAAAGATGTAAATGCGAAAAAGCCTGCAGATTGGGATGATAGGGAATAT
ATAGAGGATCCAAATGAGGTCAAACCAGAGGGATATGAATCTATTCCAAGAGAGATCCCTAACCCAAAAGCTAAAAAGCCTGATCACTGG
GATGATGAAGAGGATGGCATCTGGAGACCACCAAAAATTCCTAATCCAGCATATAAGGGTCCATGGAAACGAAAGAAAGTAAAGAACCCT
AACTATAAAGGTAAATGGAAGACCCCTTGGATCGACAATCCAGAATTTGAAGATGATCCTGATCTCTATGTGCTGAGGCCTACCAAATAT
GTTGGAATCGAAGTTTGGCAGGTCAAAGCAGGTTCTCTATTTGACAACATACTGATATGCGATGAACCCGATTATGCAAAGAAAGTGATT
GAGGAAGTCTTTGCTAATAGGGAGGCTGAAAAGGAGGCTTTTGAGGAGGCAGAGAAAGTGAGAAAAGCAAAAGAGGAAGAGGAAGCCCAA
AGAGCAAGAGAAGAAGGTGAAAGGAGGAGAAGTGAAAGAGATAGAGATAGGGGTAGGGACAGGCACAGAGATAGAAACAAGAGGCGCTAT
CGCCGTGATTATGATGATGACTATCATGATGAACTTTGACTTGGTGTTAAAGGCCACACAGCATCTTCCATTCTTGAGACAGAAATATGG
TTCCATTCATTTGGGCTTTGTGTGTTCTTCTTGTTGTATTTCACTCTTAACGGTAACTTTATTTTTGCATAGTCCAATGTGTTAGGCTTA
AGACAAGACAGATTGTACTATTTCCATCTTATTTAGCTTTTTTGGCAAAGCAAAACATGGCTCAATATTTGAAAATCCAATTAATAATGT
AAAATCCAGTTGATTATCGAGTTGAGGGTCTATTAGAAACAATCACTCTACCCCACAAGGGTANGGGGTAAGGTCTACGTATATCTCACC
CTCTTCAAACCTTACCTGTGGAAATATACATGGNTTTGTTGTTGTAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	410	Calret/calnex	42
2	22241	Calret/calnex	41
5	56651	Calret/calnex	27
1.1	101840	Concanavalin A-like lectin/glucanase subgroup Calreticulin/calnexin P Calreticulin/calnexin - Molecular Function: calcium ion binding (GO:0005509) Concanavalin A-like lectin/glucanase	33
2	118723	Calreticulin/calnexin P Concanavalin A-like lectin/glucanase subgroup Calreticulin/calnexin - Molecular Function: calcium ion binding (GO:0005509) Concanavalin A-like lectin/glucanase	33
5	129340	Calreticulin/calnexin P Concanavalin A-like lectin/glucanase subgroup Calreticulin - Molecular Function: calcium ion binding (GO:0005509) - Cellular Component: endoplasmic reticulum (GO:0005783) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Calreticulin/calnexin - Molecular Function: calcium ion binding (GO:0005509) Concanavalin A-like lectin/glucanase	24

Preceding Unigenes (1)

Unigene	Build
SGN-U245310	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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