Sol Genomics Network

Unigene SGN-U272340

Unigene Basic Information

Unigene ID:	SGN-U272340
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272340
mRNA sequence:	Length: 2574 bp

>SGN-U272340 Solanum tuberosum #4 (11 members)
AAAAATAGTTATGGAAGGAAGGATGACCCATCATAGCAACAATACCACTATTATTAACAGCACTAGCTGTATTTATACTTCAAAATCTCT
GTTTCCGATCTCTCCCACTGCCAAGTCCCCGCTGAACAGACCGTCAATCAGCGTCAAGAGGCCTTCCTTCACGTTCCTTTCTCGCTTACC
GTCTGAATTCGGGGGCAGTCCCTTGGTGAGGATGGAAGACCCGTTCACTGCTTCATTGTCGTCATCGATTACTGTTAGTCCAAGGAAGAA
CTTGACGACATCCAATCACTTGCGCCATGTGGAATCCATGGCCCACTTGCCTTCCGGAGCCGGCAGGATAACCAGATTGAATGCTCTTAT
CTTAGGCGAGGCACTTGCTTCCGAGGAGGATGATCTCGTCTTTCCCAGCGAAGATTTCTCTAGCCAGTCTCATGTTTCTTCTCCTCAGAA
GTATTTGGAGATGTATCAAAGGTCGGTCCACGATCCCTCAGGATTCTGGTCTGACATTGCATCAGAATTTTACTGGAGAGAGAAATGGGG
CCAGCAGGTTTACCATGAGAATTTTGATGTTCGAAAGGGGAAAATCAAGATCGAGTGGTTCAAGGGTGGAATGACAAATATCTGCTACAA
CTGCTTGGATAGAAACATCGAGTCTGGAAAGGGTGACAAAACAGCAATTTACTGGGAAGGAAATGAACCTGGTCTTGATAGTTCTATGAC
GTACAATCAACTCTTGGCTAGAGTTTGCCAGCTAGCAAATTATTTGAAAGATGTTGGAGTCCACAAGGGTGATGCAGTTGTCATCTACTT
ACCCATGCTTATGGAGCTACCAATTGCAATGCTTGCTTGTGCTCGTATTGGTGCCATTCACTCGGTTGTGTTTGCTGGTTTCTCAGCTGA
ATCTCTTGCTCAAAGGATCATAGATTGCAGACCGAAGGTTGTCATAACATGCAATGCTGTTAGGAGGGGGTCCAAGATTATTTATCTCAA
AGAAATTGTTGATAGTGCCCTTCTAGAATCTGCTCAGAAGGGCATCGTTACAGATGTGTGTTTGACATATGAAAATGATTCAGCAATGAA
AAAGGAAATGACTAAATGGACCAAGGGGAGAGACATTTGGTGGCAGGATGTTATTCTGAAATATCCAGTAACATGTGATGTGGAGTGGGT
TGATGCGGAAGATCCCCTTTTCCTGCTTTACACTAGTGGGAGTACCGGAAAGCCTAAGGGTGTCTTGCATACAACGGGAGGATATATGGT
GTACACTGCTACTACATTCAAGTATGCATTTGACTACAAGCCGACAGACATATATTGGTGTACAGCTGACTGTGGTTGGATTACTGGGCA
TAGTTATGTAACCTATGGACCTTTGCTAAATGGAGCAACTGTTGTGGTTTTTGAAGGGGCCCCAAATTATCCCGATGTCGGGCGTTGTTG
GGATATTGTTGATAAGTATAAGGTTTCAATATTTTATACAGCTCCAACACTGGTGAGATCTCTGATGCGTGAGGGAGACGAGCATGTCTC
TCGATATTCACGCAAATCTTTACGGGTGCTTGGAAGTGTGGGTGAGCCTATCAATCCAAGTGCATGGAGGTGGTTTTTCAATGTGATAGG
TGATGCAAGGTGCCCCATATCTGATACATGGTGGCAAACAGAAACCGGTGGCTTCATGATTACTCCTTTACCAGGAGCGTGGCCGCAGAA
ACCTGGTTCTGCTACTTTTCCTTTCTTTGGAGTCCAGCCAGTAATAGTGGATGAGAAAGGTGTTGAGATTGAAGGTGAGTGCAGTGGGTA
TCTGTGCGTGAAAAGCTCGTGGCCTGGGGCATTCCGAACACTTCATGGGGATCATGAGAGATATGAAACCACATATTTTAGTGCCTTCCC
GGGCTATTATTTCAGTGGTGATGGCTGCAGCAGGGACAAAGATGGTTACTACTGGCTCACCGGAAGAGTAGATGATGTGATTAATGTGAG
TGGACATCGTATTGGCACAGCTGAAGTGGAATCTGCTCTAGTTTCACATCCTCAGTGTGCTGAAGCAGCTGTGGTTGGTGTGGAGCATGA
GGTTAAAGGACAGGGGATATATGCATTTGTTACTCTAGTCGAAGGTGTTCCATACAGCGATGACCTGCGAAAAAGTCTTGTGATGGTTGT
TAGGAATCAGATTGGGGCTTTTGCAGCGCCAGACAAGATACATTGGGCACCAGGTCTTCCAAAGACGAGAAGTGGGAAAATAATGAGAAG
AATTCTGAGGAAAATCGCTTCCAGGCAGTTAGATGAGCTTGGGGACACTAGTACCCTTGCAGACCCAACTGTGGTTGATCAGCTTATTGC
ACTTGCTGATTGCTAAAGTAACAACTTCTAAATATAGTGAAGTTAGAGGTTTAGCTAACTGTGTTGGTAGAGATTGGTATTTTGTTTCCG
TTTTAGTGTGAGTACCTTTTTCCTCCAAATTTGAAACAACTTATGGTTAACACACTTTTGAAGATCAGGTTACATTTAAAATCAAGAAAT
AAAATACCAAGATGTGGATTATCTTTTCAATGTTAAAAAAAAAAAAAAAAAACT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
acs	acetyl CoA synthetase	acetyl CoA synthetase

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (11)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	51	AMP-bind	230
2	23627	AMP-bind PBS_lyase_HEAT Acac_CoA_synth	11
5	58335	AMP-bind PBS_lyase_HEAT Acac_CoA_synth	9
1.1	101420	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	214
2	120053	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Acetate--CoA ligase - Molecular Function: acetate-CoA ligase activity (GO:0003987) - Molecular Function: AMP binding (GO:0016208)	11
5	130528	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Acetate--CoA ligase - Molecular Function: acetate-CoA ligase activity (GO:0003987) - Molecular Function: AMP binding (GO:0016208)	10

Preceding Unigenes (2)

Unigene	Build
SGN-U246384	Solanum tuberosum #3
SGN-U265500	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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