Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578930 in the current build, Tomato 200607 #2

Unigene SGN-U312453

Unigene Basic Information

Unigene ID:	SGN-U312453
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312453
mRNA sequence:	Length: 802 bp

>SGN-U312453 Tomato 200607 #1 (57 members)
AAATAACTACCACCTCCTCTTCAATCAACGATCAAAATCGAAAGCAAGCAAGCAAAAAAACGTAGAAAATTCTCAAAAAGTTCACTGAAA
ATGTCTCTGATCCCAAGAATTTTCGGCGATCGACGAAGCAGCAGCATGTTCGATCCATTTTCAATTGACGTATTTGATCCATTCAGGGAA
TTAGGCTTCCCAAGTACCAATTCAGGGGAGAGCTCTGCATTTGCCAACACACGAATAGACTGGAAGGAAACTCCAGAAGCTCATGTGTTC
AAGGTTGATCTTCCAGGGCTTAAGAAGGAGGAAGTCAAAGTGGAAGTCGAGGAGGATAGGGTTCTTCAGATCAGCGGAGAGAGGAACGTG
GAGAAGGAAGATAAGAATGATAAGTGGCATCGCATGGAGCGAAGCAGCGGGAAATTCATGAGGAGATTTAGACTTCCGGAGAATGCAAAG
ATGGATCAAGTTAAGGCGTCTATGGAGAATGGAGTGCTTACTGTTACTGTTCCAAAGGAAGAGGTGAAGAAGCCTGAGGTCAAGTCCATT
GAGATCTCTGGTTAAATGCTCTGGTTGGGAACAAACCTGTAGTATTAAGTCAAGTGTGTACTGTCGAAGATTTTGAGTTTACTTATTTTC
TGTCTGTGTCTTGTGCGCTGAGTCGTTTTACTAGTTGGTTGTTATCTGTTTGATGTATTTTCCTTGAGAACTCTTATGTGTGAAAGAATG
TATTACTACTAATAATAGTATTTCTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (3)

Locus symbol	Locus name	Gene activity
hsp17d6	17.6 kD class I small heat shock protein (HSP17.6)
hsp17d7	17.7 kD class I small heat shock protein HSP17.7
hsp17d8	17.8 kD class I small heat shock protein (HSP17.8)

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	18
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	7
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	20
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	4

mRNA member sequences (57)

Alignment image suppressed for unigene with 57 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101468	HSP20-like chaperone	116
2	118487	Heat shock protein Hsp20 HSP20-like chaperone	87
5	129010	Heat shock protein Hsp20 HSP20-like chaperone	68

Preceding Unigenes (1)

Unigene	Build
SGN-U212699	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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