Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580991 in the current build, Tomato 200607 #2

Unigene SGN-U312611

Unigene Basic Information

Unigene ID:	SGN-U312611
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312611
mRNA sequence:	Length: 1754 bp

>SGN-U312611 Tomato 200607 #1 (17 members)
GAAAGATGCGCAGGAAAAAGTGGTAAAATTTTCTTTCCACGGACAACATGCAGAGCTCAAGCATGGAAGTGTTGTTATTGCCGCTATCAC
AAGTTGCACTAATACATCAAATCCCAGTGTTATGCTAGGAGCAGCCCTTGTTGCAAAAAAGGCTTGCGACCTGGGTCTAAATGTTAAACC
ATGGGTTAAAACAAGTCTTGCTCCTGGCTCCGGTGTAGTTACTAAATATTTGCTCCAGAGTGGACTGCAGAAGTATTTAAATGAGCAAGG
TTTTAATATTGTTGGATATGGCTGCACAACTTGTATTGGGAATTCTGGAGATTTGGATGAATCAGTTTCTTCTGCTATATCAGAAAATGA
CATTGTTGCTGCTGCCGTACTCTCTGGAAATCGAAACTTTGAGGGGCGTGTTCATCCTTTGACGAGAGCTAACTACCTTGCTTCACCTCC
TTTAGTGGTTGCCTATGCTCTTGCTGGCACTGTTGATATAGACTTTGATAAAGAACCAATTGGAGTGGGGAAGGATGGTAATAATGTCTA
CTTCAGGGATATTTGGCCATCGACTGAAGAAATTGCCGAGGTTGTTCAATCAAGTGTATTGCCTGACATGTTCAAGAGTACGTATGAAGC
TATTACAAAGGGGAATAACATGTGGAATCAATTGTCAGTACCGGCTACCTCGCTCTACTCTTGGGACACTAGCTCTACGTACATTCATGA
GCCACCATATTTCAAGGATATGACCATGGATCCCCCAGGGCCCCATGGAGTGAAGGATGCTTACTGCTTGCTGAACTTTGGTGATAGTAT
TACCACAGATCACATTTCACCAGCTGGAAGCATCCACAAAGATAGCCCTGCTGCTAAGTACCTTAATGAGCGTGGGGTTGATCGCAGGGA
CTTCAACTCATATGGTAGTCGTCGTGGTAATGATGAAATTATGGCTAGGGGTACTTTTGCCAACATCCGAATTGTTAATAAGCTGTTAAA
TGGTGAAGTTGGCCCAAAGACGATTCACATTCCCTCTGGAGAGAAGCTCTCCGTGTTTGATGCTGCAATGAAATACAAGTCTGCTGGGCA
AGACACAATAATCTTGGCTGGAGCTGAATACGGAAGTGGTAGCTCCCGAGATTGGGCTGCTAAGGGCCCCATGTTGTTGGGAGTTAAAGC
TGTAATTGCTAAAAGCTTCGAGAGGATTCACCGTAGCAACTTGGTAGGAATGGGAATTGTGCCTCTATGTTTCAAGGCTGGTGAAGATGC
AGATTCACTTGGATTGACAGGTCATGAGCGATATACCATTGATCTCCCAGACAACATTAGCGAGATCCGCCCAGGTCAAGATGTTACTGT
ACAAACAGACACTGGAAAATCTTTCACATGCGTAGTGCGCTTTGACACTGAGGTGGAGTTGGCTTACTTCAACCATGGTGGTATCCTCCC
ATACGTCATTCGACAGTTGAGTCAGCAATGAAACACAGCACTGATTATCTAGTAGCTACGTTTCTCAGATAACTGTTTCGGTCTGGAAAG
AGGAGGAAGGATCATGAATCTTTTAACGCCATTGTTGGCGAGGTTATTTTGTTACTTCAGAAAGCACTGTCTAGCTAATCTTTTGGAGAT
GACTAGCAGTGTATCATCTTGTGGGAATAAAGTCTTAAGTCTGGAAATTTGTAAAACTTGCTTTACATCAATTGAAGATTTTGGTTGCTT
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2

mRNA member sequences (17)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101936	Aconitate hydratase N-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: lyase activity (GO:0016829)	28
2	119188	Aconitate hydratase N-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: lyase activity (GO:0016829) Aconitate hydratase C-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: hydro-lyase activity (GO:0016836) Aconitate hydratase 1 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: aconitate hydratase activity (GO:0003994) - Molecular Function: iron ion binding (GO:0005506)	19
5	129539	Aconitate hydratase N-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: lyase activity (GO:0016829) Aconitate hydratase C-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: hydro-lyase activity (GO:0016836) Aconitate hydratase 1 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: aconitate hydratase activity (GO:0003994) - Molecular Function: iron ion binding (GO:0005506)	19

Preceding Unigenes (1)

Unigene	Build
SGN-U213649	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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