Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577571, SGN-U577604, and SGN-U580949 in the current build, Tomato 200607 #2

Unigene SGN-U312858

Unigene Basic Information

Unigene ID:	SGN-U312858
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312858
mRNA sequence:	Length: 1273 bp

>SGN-U312858 Tomato 200607 #1 (131 members)
TTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGG
CTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGC
CGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAG
TGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTA
CTTTCTTTGCACCTCCTGGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGC
TCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCG
CGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATG
GATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTATCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAG
TGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTA
GTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTA
CCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTAAAAAAAAAAAATCTGAAT
CAGTTTACACGCAAAAAAAAAAATTGTGCAGGTATATCGTTGTTTTATCTTTCTTATTCTTGGAAGAAGCAGTTCAATGAGGAAGTATAC
ATAGTCTAGGATTTGCAGTTCAAATTTGAAGGTTGTCATTCTTACATTTTTAACCTGAGTTCTCATATGGTTCTATCTGCATACATTTGT
AGCTTAATCGATGATTCTTCAGTATTTTCGAGATGTTGTTCTTGGCTAAGCTGTTATTAATAAATGTAATGTTCATCCTATTTCAAAAAA
AAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	14
Solanum lycopersicum	LB	Leaf Mature leaves	3316	17
Solanum lycopersicum	LC	Leaf Mature leaves	5712	9
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	13
Solanum lycopersicum	cLER	leaf 4 weeks	5127	11
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	19
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	6
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	10
Solanum lycopersicum	cTSC	seed	2256	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (131)

Alignment image suppressed for unigene with 131 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 2 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101509	ABC-1 Protein kinase-like	95
2	121797	Rieske iron-sulfur protein - Biological Process: electron transport (GO:0006118) - Molecular Function: ubiquinol-cytochrome-c reductase activity (GO:0008121) - Cellular Component: membrane (GO:0016020) - Cellular Component: ubiquinol-cytochrome-c reductase complex (GO:0045285) Rieske [2Fe-2S] region - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	6
5	132008	Rieske iron-sulfur protein - Biological Process: electron transport (GO:0006118) - Molecular Function: ubiquinol-cytochrome-c reductase activity (GO:0008121) - Cellular Component: membrane (GO:0016020) - Cellular Component: ubiquinol-cytochrome-c reductase complex (GO:0045285) Rieske [2Fe-2S] region - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	6

Preceding Unigenes (2)

Unigene	Build
SGN-U212832	Lycopersicon Combined #3
SGN-U212833	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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