Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577193 in the current build, Tomato 200607 #2

Unigene SGN-U313256

Unigene Basic Information

Unigene ID:	SGN-U313256
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313256
mRNA sequence:	Length: 1608 bp

>SGN-U313256 Tomato 200607 #1 (44 members)
AACAACCAAAACTTGTTCTTTTTTCAATGCTAATTTATTTTCATTTTTCCATTATTATTATTAAAAATTAAAATAGCAAATAAATAAATA
AAAAAAAAAATTGGAATAATTAAGTTGTAAGTGTAATAGTTTAATACAAGCAACCCTGAAAATCGCCTATATAAAGTGTATAAAAATTTA
GTCTTTGCCTCATCAAAGAAAATTCATCTTATAGAGAATTTTAATTTAAGAAGTTTATCATCATCATGTCTCTGCTTTCAGATCTTATCA
ACCTCAATCTCTCAGGTGATACTCAGAAGATCATTGCTGAATACATATGGATTGGTGGATCAGGCATGGACATGAGGAGCAAAGCCAGGA
CTCTCCCTGGTCCAGTTACTAGTCCTGCAGAACTACCCAAATGGAACTACGATGGATCGAGCACTGGTCAAGCTCCCGGAGAAGACAGTG
AAGTGATCTTATATCCACAAGCAATCTTCAAGGACCCATTCAGAAGAGGCAACAACATCTTGGTCATGTGTGATGCCTATACTCCTGCTG
GTGAGCCCATCCCAACAAACAAGAGGCACGCCGCCGCCAAGGTCTTCAGCCACCCTGATGTGGCTGCTGAGGAAACTTGGTATGGTATTG
AACAAGAATATACCTTGCTGCAAAGGGAGGTCAACTGGCCTCTTGGATGGCCCATTGGCGGTTTTCCTGGCCCCCAGGGACCATACTACT
GTGGAACCGGAGCTGACAAGGCCTTTGGACGTGACATTGTTGACGCCCATTACAAGGCTTGTCTCTATGCTGGGATTAACATCAGCGGGA
TCAATGGTGAAGTCATGCCGGGACAGTGGGAATTTCAAGTTGGACCTTCTGTTGGCATCTCAGCTGGTGATGAAGTGTGGGTAGCTCGTT
ACATTCTAGAGAGGATTGCAGAGATTGCTGGGGTGGTCGTGTCATTCGACCCCAAGCCTATTCCGGGCGACTGGAATGGTGCAGGTGCTC
ACACAAATTACAGCACCAAGTCGATGAGGGAAGACGGAGGCTATGAAATAATCTTAAAGGCTATTGAGAAGCTTGGCTTGAAGCACAAAG
AACACATAGCTGCATATGGTGAAGGCAACGAGCGTCGTCTCACTGGAAAGCACGAAACAGCCAACATCAACACATTCAAATGGGGGGTTG
CAAACCGTGGTGCATCTGTCCGTGTTGGAAGAGACACAGAGAAGGCAGGCAAGGGATACTTTGAGGACAGAAGGCCAGCCTCAAATATGG
ACCCATACGTCGTTACCTCCATGATTGCAGAAACCACCATCATCGGTTAACCTTGAAGACTTGATAGTATGAATTTGCTCGAGGGATCGC
TTGTTTCTGGTTTGCACAATTTGGGATAGGAGAAAAGATTGAATTGTGGAACGACCCTTTGGACTTCACCTGTGTTATTTAGTTATAGGG
ATAGTTTGTCTCTGGTTATTTTTCTGTTTATTTGCCCCAGTTGAATTGTATTTTCATACAGCAAAGCCTTATTTCATTGCCTATGATTTG
GCAATGCTGTGTTACAAATGTTATTCTTATTAATAACAAAGATATTGAAAGGGTTTGGTTCACTTAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
gs1	glutamine synthetase	glutamine synthetase

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	14
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	cTSD	seed	1504	2
Solanum lycopersicum	vSlycmRNA		8362	3
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4

mRNA member sequences (44)

Alignment image suppressed for unigene with 44 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101874	Glutamine synthetase beta-Grasp - Molecular Function: glutamate-ammonia ligase activity (GO:0004356) - Biological Process: glutamine biosynthesis (GO:0006542) - Biological Process: nitrogen compound metabolism (GO:0006807) Glutamine synthetase catalytic region - Molecular Function: glutamate-ammonia ligase activity (GO:0004356) - Biological Process: nitrogen compound metabolism (GO:0006807)	31
2	118762	Glutamine synthetase catalytic region - Molecular Function: glutamate-ammonia ligase activity (GO:0004356) - Biological Process: nitrogen compound metabolism (GO:0006807) Glutamine synthetase beta-Grasp - Molecular Function: glutamate-ammonia ligase activity (GO:0004356) - Biological Process: glutamine biosynthesis (GO:0006542) - Biological Process: nitrogen compound metabolism (GO:0006807)	31
5	129207	Glutamine synthetase catalytic region - Molecular Function: glutamate-ammonia ligase activity (GO:0004356) - Biological Process: nitrogen compound metabolism (GO:0006807) Glutamine synthetase beta-Grasp - Molecular Function: glutamate-ammonia ligase activity (GO:0004356) - Biological Process: glutamine biosynthesis (GO:0006542) - Biological Process: nitrogen compound metabolism (GO:0006807)	31

Preceding Unigenes (1)

Unigene	Build
SGN-U215085	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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