Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U568740 and SGN-U587664 in the current build, Tomato 200607 #2

Unigene SGN-U313531

Unigene Basic Information

Unigene ID:	SGN-U313531
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313531
mRNA sequence:	Length: 1959 bp

>SGN-U313531 Tomato 200607 #1 (62 members)
TATACTCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATT
GCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTAT
AAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTGATCCTCATTAATGGTCAATTTCCTGGT
CCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGAATGGAATC
AAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACA
AAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGA
TCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTATTGAGG
CAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGA
AAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATT
GAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCT
CCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACA
CCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTGGAATCTGACATCA
AATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTT
ATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCC
GGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGAT
TTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGTTTTGGATCT
GGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTATATCCCAAATCTTGGACT
GCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTC
AGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACT
TAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGC
CGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCAT
TGTACTTAAAAATTCCTAGTTCTAAATATAGCAAACAATTGTGATCAAAAAAAAAAAAAAAAAAACTCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	23
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	11
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (62)

Alignment image suppressed for unigene with 62 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101438	Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507)	162
2	118466	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	111
5	128966	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	105

Preceding Unigenes (2)

Unigene	Build
SGN-U213493	Lycopersicon Combined #3
SGN-U213494	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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