Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U580215 and SGN-U592395 in the current build, Tomato 200607 #2

Unigene SGN-U313747

Unigene Basic Information

Unigene ID:	SGN-U313747
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313747
mRNA sequence:	Length: 1794 bp

>SGN-U313747 Tomato 200607 #1 (68 members)
TCGGCCGAATTGATAATAACAACACTCTTGTTTTTTTAATTGTATTATCGGAGCTCGGATAATGAATCGTTCCGTCGCCGGAGTTTTGTT
CCTGATTGCGCTCTCGTTAAACGTCTCCGTTTCCGAGAGCCGTAATTTTTTGAAACTTCCGTCTGAAGGTTCTAGATTCTTCGATGCCGA
TGAGATCGACTCCGTCGGTACTAGATGGGCTATTTTGCTTGCCGGATCAAACGGTTATTGGAATTACCGTCACCAGGCTGATATATGTCA
TGCATATCAACTGTTGAAGAAGGGTGGTCTCAAAGATGAGAACATTGTTGTGTTCATGTATGATGACATTGCAAACAATGAAGAGAACCC
AAGGCAAGGAGTTATCATTAATAGCCCTCATGGTGAGGATGTTTACAACGGAGTACCTAAGGATTACACGGGGGATGATGTTACTGTTGA
CAACTTTCTTGCTGCTCTCCTTGGGAACAAAACTGCACTTACCGGAGGCAGTGGAAAGGTTGTAGATAGTGGTCCAAATGATCATATCTT
CATCTTTTATAGTGATCATGGAGGTGCTGGAGTGCTTGGAATGCCTACCAATCCTTACCTCTATGCAAATGATCTGATTGATGCTCTGAA
AATGAAGCATGCTTCGGGAACATACAAAAGCTTGGTATTTTACCTTGAAGCTTGTGAGTCTGGAAGTATGTTTGAGGGTCTTCTTCCTGA
AGGTTTAAACATCTATGCCACAACAGCATCAAATGCTGATGAGAGCAGCTGGGGAACCTATTGCCCAGGGGAGTACCCTAGTCCTCCTAT
CGAATATGACACCTGCCTGGGTGACTTGTATAGTATTTCCTGGATGGAGGACAGTGAAAGACACAACCTGCGGACTGAAAGTTTGAAGCA
GCAATATCACCTGGTCAAAGAGAGAACTGCCAGTGGGAATCCTGCCTATGGTTCGCATGTCATGCAATATGGTGATGTACATCTCAGCAA
GGATGCTGTATTCCTATATATGGGTACCGATCCTGCAAATGATAATTCTACTTTTATGGATGACAATTCCTTGCGAGTATCAAAGGCTGT
AAACCAGCGTGATGCAGATCTTGTGCATTTCTGGTACAAGTTCCACAAGGCTCCTGAAGGCTCTGTTAGCAAAACTGAGGCTCAGAAACG
CTTAAATGAAGCAATATCACATAGAATGCACTTAGATAACAGCATAGCCCTTGTCGGTAAGCTTTTGTTTGGAATTAAAAAAGGTCCAGA
GGTGCTGACTAGTGTCCGCCCTGCTGGTCAGCCGCTTGTTGACAATTGGGACTGTCTTAAATCTTATGTAAGAACATTTGAAACACATTG
TGGATCGTTATCTCAGTATGGAATGAAACATATGCGCTCTGTTGCTAACATATGCAACGCTGGAATTAAAATGGAGCAGATGGTGGAGGC
ATCGGCACAAGCTTGTCCCAGTGTTCCATCCTATACCTGGAGTTCCCTCCACAGGGGTTTTAGTGCATGATTGGCATGTAATGCGAAATA
TGCACGCCTAGATGCTACCAAAATTATCCGTAATTATCAGTATGAAGATTGATATGGTTGTTTGCTAGTGTAATTGCTTCCTTGTAAATA
CAGTTTAGAAGCACATCAATATTGAGTGGAAATGTACTAGATGAACATTTCTTATTGTAAATATTGTTATAGTTGGTGATCATTGTAAAT
AACTCATTACTATGCAAAAAGTTCTACCTGAACAAACTTTCTTTCAAAAAAAAAAAAAAAAAAAATTTAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	32
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	6
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (68)

Alignment image suppressed for unigene with 68 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101716	Peptidase C13 legumain - Molecular Function: legumain activity (GO:0001509) - Molecular Function: cysteine-type endopeptidase activity (GO:0004197) - Biological Process: proteolysis (GO:0006508)	43
2	118967	Peptidase C13 legumain - Molecular Function: legumain activity (GO:0001509) - Molecular Function: cysteine-type endopeptidase activity (GO:0004197) - Biological Process: proteolysis (GO:0006508)	24
5	129350	Peptidase C13 legumain - Molecular Function: legumain activity (GO:0001509) - Molecular Function: cysteine-type endopeptidase activity (GO:0004197) - Biological Process: proteolysis (GO:0006508)	24

Preceding Unigenes (1)

Unigene	Build
SGN-U215158	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: