Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U580045 and SGN-U581138 in the current build, Tomato 200607 #2

Unigene SGN-U313941

Unigene Basic Information

Unigene ID:	SGN-U313941
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313941
mRNA sequence:	Length: 1474 bp

>SGN-U313941 Tomato 200607 #1 (48 members)
GCTGTTTCCATAAAAAGAGGCCACTCCTTTAGTACGCTCTCTCACTTTCCTACTTTTCGCTTCCCCCAATGGATTCTCTCACTCTCATTT
GTACCGTCGCTCTTGTCGCCGCCGGCGGACTTTACTGGTTCGTTTGCTTTTTTGGCTCCGCCGAGGTTAAGGGTAAACGGGCTGTCCAAC
TTACCGGAGGATCCATCGATAAAGAGAATGTCCAAGACAACTATAAACAGTACTGGTCTTTCTTCCGACGGCCTAAGGAAATCGAAACCG
CCGATAAAGTCCCTGTTTTCGTAGATACTTTCTATAATCTGGTTACTGATATTTACGAATGGGGTTGGGGTCAGTCTTTTCACTTTTCCC
CTTCTCTTCCTGGTAAATCTAACCGTGAGGCTACTCGTATTCACGAGGAAATGGCCGTCGATCTATTAGGTGTGAAGCCCGGGGCCCGCA
TTCTGGATGCTGGTTGTGGTGTGGGCGGGCCGATGCGGGCTATTGCTGCCCATTCTAAAGCTAATGTGGTTGGTATCACCATTAATGAGT
ATCAGGTTAAACGAGCCAGGATGCACAACAAAAAAGCAGGGCTTGATTCACTTTGCGAAGTTGTTTGTGGGAATTTCCTGCAAATGCCTT
TTGCAGACAACAGTTTTGACGGTGTTTATTCGATTGAAGCTACATGTCATGCTCCTAAGCTTGAAGAAGTGTACCAGGAGATCTACCGGG
TGTTAAAACCCGGATCCCTGTACGTTTCTTATGAATGGGTTACCACGGAATTGTACAAAGCCGAAGACCCTGAACATGTAGAGATTATCC
ATGGAATTGAAAGGGGTGATGCTCTGCCAGGTTTGAGAACGTACAAGGATATTGCTGAAATTGCTAAGAAAGTGGGTTTTGAAGTGGTGA
AAGAGAAGGATTTAGCAAAGCCCCCATCACATCCATGGTGGACAAGGCTTAAAATGGGGAGAGTTGCCTACTGGAGAAACCACATTTTGG
TCACAATTCTTGCATTTCTTGGAATAGCACCAAAAGGAACGGTTGATGTTCACGAGATGCTGTTTGTGACTGCTGATTATTTAGCTCAAG
GTGGTGAAAAGGGCATTTTCTCTCCAATGCATATGATTCTCTGCAGAAAACCTGCAGCAGAGTAAAAACCCAACCCAAATTATTGCCTGT
AGAGATTGACCATGGAGGTTAATTTCAATCTGTTGTTCCATTTTAGTTTTTTGTTATTTAATTGAGCGGATTGTTGTTTTGTTACTCTTT
TGTAGCTTCAAGTTTAGTTTCCAATCTCTATCTCTTTTTGTTCTTGTTTCAATCTATAATTAACAAACTAGAAAGAAAAAAAAAAAAAAA
AAGCAATTACACGCTTTCTGTTGTTGTTAGTGAGTGCATTTGATCAGACATTTTTTCTTTCCGATTGTTGTCGTATATTTTGGAACTTCT
GCACATATTATGTGGCACTTAATAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	13
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	6

mRNA member sequences (48)

Alignment image suppressed for unigene with 48 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101467	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757)	119
2	119065	Sterol methyltransferase C-terminal SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Methyltransferase type 11	21
5	130378	Sterol methyltransferase C-terminal SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Methyltransferase type 11	10

Preceding Unigenes (1)

Unigene	Build
SGN-U215017	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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