Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581494 in the current build, Tomato 200607 #2

Unigene SGN-U314118

Unigene Basic Information

Unigene ID:	SGN-U314118
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314118
mRNA sequence:	Length: 3522 bp

>SGN-U314118 Tomato 200607 #1 (25 members)
TTGAGGTGGAGGAAGAGGCAATTACTTGGACACAAGCACTGTGGTTGCTCTTCAAAGCAAAAGTGGACTGACTTGCTGTGCACCCACATT
GCAATTAAGCCTACCCTCCATAAATTTTCACCTTTTTTTTTAGCTTTTTGTTCCAAGATTCTTGATCTTGCTTCAAATTTCCCTCCATCC
AGAAAGGAAAGTTGTGTTCTTGGATGTGTTTGTAAGATTAAAAAAAAAAAGCAAAAAAGGGAGGTGGAATCATGGAGGTTAACTCACTTC
AGAAGTGGGTTCTGCTATGGTGTATAGTATTGTTTATTAGCTCTGGGTTGGTTCACTGTGATGTTACATATGATAGGAAAGCTATTGTGA
TTAATGGGCAAAGAAGATTACTTTTCTCTGGTTCTATACATTACCCTAGAAGTACCCCTGAGATGTGGGAAGATCTGATAAACAAGGCAA
AAGAAGGGGGTTTGGATGTGGTTGAGACCTATGTCTTTTGGAATGTTCATGAGCCTTCTCCTGGCAATTACAATTTTGAAGGAAGATATG
ACCTGGTGAGGTTTGTAAAAACGATTCAGAAAGCAGGGCTGTATGCTCATCTTCGAATTGGCCCTTACGTTTGTGCAGAGTGGAATTTTG
GAGGGTTTCCAGTATGGCTGAAGTATGTACCTGGCATTAGCTTCAGAGCTGATAATGAACCTTTCAAGAACGCAATGAAAGGGTATGCTG
AGAAAATTGTTAACTTGATGAAGAGTCATAATCTTTTCGAGTCTCAGGGTGGTCCAATCATACTCTCACAGATTGAGAATGAGTATGGGC
CTCAAGCCAAGGTACTTGGAGCACCGGGACATCAGTATTCAACATGGGCTGCAAATATGGCAGTTGGATTAGACACAGGCGTCCCATGGG
TGATGTGCAAGGAAGAAGATGCACCAGATCCTGTGATCAACACATGCAATGGTTTCTACTGTGATAATTTCTTCCCAAACAAACCATACA
AACCTGCAATTTGGACTGAAGCTTGGAGTGGATGGTTCTCGGAATTTGGCGGTCCCCTTCATCAGAGACCAGTTCAGGATTTGGCATTTG
CTGTTGCCCAATTTATACAAAGAGGAGGATCTTTTGTTAACTATTACATGTACCATGGGGGCACGAACTTTGGACGCACTGCGGGTGGGC
CATTCATCACTACCAGCTATGATTATGATGCTCCAATTGATGAGTATGGTTTGATCAGACAGCCAAAATATGGTCATCTCAAGGAGCTTC
ATAGAGCTGTCAAGATGTGTGAGAAATCCATAGTTTCTGCAGATCCAGCAATCACATCCTTGGGAAACCTTCAACAAGCATATGTGTACT
CTTCAGAGACAGGGGGTTGTGCAGCTTTCTTGTCAAACAATGACTGGAAATCTGCTGCTAGAGTAATGTTCAATAATATGCACTATAATT
TGCCTCCTTGGTCCATTAGCATCCTTCCTGATTGCAGAAATGTAGTCTTCAACACGGCCAAAGTTGGAGTTCAAACATCAAAGATGGAAA
TGCTACCGACTAACTCAGAGATGCTATCTTGGGAGACTTACAGTGAAGATATATCTGCATTAGATGACAGCTCATCAATTAGGTCTTTTG
GTCTCTTGGAGCAAATAAATGTAACCAGAGATACAAGTGATTATTTGTGGTACATAACTAGTGTTGATATTGGTTCAACTGAGTCCTTCT
TGCATGGTGGAGAGCTCCCTACTCTTATAGTTGAGACAACAGGCCATGCTATGCATGTGTTTATTAATGGTCAGCTCTCAGGTTCTGCAT
TTGGGACAAGGAAGAATAGGAGATTTGTATTTAAAGGAAAAGTCAATCTTCGTGCTGGCTCAAACAGAATTGCACTGCTTAGCGTGGCTG
TCGGGCTGCCGAACATTGGTGGACATTTTGAAACATGGAGCACTGGCGTACTAGGTCCTGTTGCAATTCAAGGACTTGACCATGGAAAAT
GGGACTTGTCCTGGGCAAAGTGGACATATCAGGTTGGGCTTAAAGGGGAGGCCATGAATCTTGTTTCGACAAATGGTATTTCTGCCGTTG
ACTGGATGCAAGGTTCATTAATTGCACAGAAACAACAACCCTTGACATGGCATAAGGCTTACTTCAATACACCCGAAGGAGATGAGCCAT
TGGCTTTGGACATGAGCAGTATGGGTAAAGGTCAAGTATGGATTAATGGCCAGAGTATTGGTAGATATTGGACTGCATATGCTACTGGAG
ATTGCAATGGGTGCCAATATTCTGGAGTTTTTCGGCCTCCAAAATGTCAACTGGGATGTGGGGAACCAACTCAAAAATGGTACCATGTTC
CTCGGTCTTGGTTAAAACCCACTCAAAATCTGTTGGTGCTTTTTGAAGAACTTGGCGGAGATCCCACAAGAATTTCTCTCGTGAAAAGAT
CAGTCACTAACGTATGTTCGAATGTAGCTGAATATCATCCAAACATTAAGAACTGGCAAATTGAGAACTACGGCAAAACCGAAGAGTTTC
ACCTACCCAAAGTTCGCATTCACTGTGCTCCTGGTCAATCTATTTCCTCCATTAAATTTGCAAGCTTCGGAACTCCTCTCGGAACCTGTG
GGAGCTTCAAGCAAGGAACTTGCCATGCTCCCGACTCACACGCCGTTGTAGAAAAGAAATGTCTAGGACGCCAAACATGTGCTGTGACAA
TATCAAATAGCAACTTTGGAGAAGATCCCTGCCCCAACGTACTGAAGCGGTTGTCTGTAGAAGCACATTGTACACCTACTCAGAATTGAA
CAGTAAAAAAAAGAAAAGTTGTTCAGATGTTGCGTAACTTAGTGTACACCCATGAGGAAAAGGCTAGTGAGGTAAGAATAAACTGTGAAG
CAAAGGAAATAGGAGGTAGTAGTTTGGTTGGTGAATGTTGTCAAGGAAAACTCCTGATACACGTTCATTAGGTAGTACTCTAAATTTTGG
GGGTGCCGAAGGGGACTCTGTGAAGATAGCATATTTATACACGAGTTTGTAGATTGTTGGGAGTTCCAAAATGCCACTCCCATCTTAGAG
TCTGGTCCCTTTCTGCTTTTAAATTGGAAATATGGACCGGATAAGGTCATTTATGTACTGTTTAGTCAGTGTGATAGCTTGTCTTCCTGG
GAAAACCAAACCCCTTAGGTTCATGTTAGGAACGGATCCTAACATGAACCTTTATAGTCGTCTGTGATGTGCTGTTGGCAGAAAGAATTC
AATGGAAAAGTGTAATTTGCATCTACGTTGTCTTTCATTTTCATGTAACCTAGCGCCATATATGAGCATGTTAATTAAGCCTAAACAGAA
GTACATGGGACGGGACTCATGACACTCACCAAAGCATTTCTCTTGTAAGGTACCATTGTTCCGTTTTGAGTTCACACCCTGCATCCATTT
TTTATGGTTCGATTGCTGATGTCTTCACCCTGTGCTTGGATTATTCAACTCTTCTTACAACAAACTGAACAGAAGTTTGCAGTTCGAAAA
AAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tbg6	beta-galactosidase 6	beta-galactosidase

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (25)

Alignment image suppressed for unigene with 25 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P116930 (845 Aa)

MEVNSLQKWVLLWCIVLFISSGLVHCDVTYDRKAIVINGQRRLLFSGSIHYPRSTPEMWEDLINKAKEGGLDVVETYVFWNVHEPSPGNY
NFEGRYDLVRFVKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRADNEPFKNAMKGYAEKIVNLMKSHNLFESQGGPIILSQ
IENEYGPQAKVLGAPGHQYSTWAANMAVGLDTGVPWVMCKEEDAPDPVINTCNGFYCDNFFPNKPYKPAIWTEAWSGWFSEFGGPLHQRP
VQDLAFAVAQFIQRGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAVKMCEKSIVSADPAITSLGNL
QQAYVYSSETGGCAAFLSNNDWKSAARVMFNNMHYNLPPWSISILPDCRNVVFNTAKVGVQTSKMEMLPTNSEMLSWETYSEDISALDDS
SSIRSFGLLEQINVTRDTSDYLWYITSVDIGSTESFLHGGELPTLIVETTGHAMHVFINGQLSGSAFGTRKNRRFVFKGKVNLRAGSNRI
ALLSVAVGLPNIGGHFETWSTGVLGPVAIQGLDHGKWDLSWAKWTYQVGLKGEAMNLVSTNGISAVDWMQGSLIAQKQQPLTWHKAYFNT
PEGDEPLALDMSSMGKGQVWINGQSIGRYWTAYATGDCNGCQYSGVFRPPKCQLGCGEPTQKWYHVPRSWLKPTQNLLVLFEELGGDPTR
ISLVKRSVTNVCSNVAEYHPNIKNWQIENYGKTEEFHLPKVRIHCAPGQSISSIKFASFGTPLGTCGSFKQGTCHAPDSHAVVEKKCLGR
QTCAVTISNSNFGEDPCPNVLKRLSVEAHCTPTQN

SignalP predicts secretion with a score of 0.918

IPR000922 D-galactoside/L-rhamnose binding SUEL lectin
IPR001944 Glycoside hydrolase, family 35
IPR001093 IMP dehydrogenase/GMP reductase

Prediction based on longest six frame method

>SGN-P243304 (855 Aa)

KKKAKKGGGIMEVNSLQKWVLLWCIVLFISSGLVHCDVTYDRKAIVINGQRRLLFSGSIHYPRSTPEMWEDLINKAKEGGLDVVETYVFW
NVHEPSPGNYNFEGRYDLVRFVKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRADNEPFKNAMKGYAEKIVNLMKSHNLFE
SQGGPIILSQIENEYGPQAKVLGAPGHQYSTWAANMAVGLDTGVPWVMCKEEDAPDPVINTCNGFYCDNFFPNKPYKPAIWTEAWSGWFS
EFGGPLHQRPVQDLAFAVAQFIQRGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAVKMCEKSIVSA
DPAITSLGNLQQAYVYSSETGGCAAFLSNNDWKSAARVMFNNMHYNLPPWSISILPDCRNVVFNTAKVGVQTSKMEMLPTNSEMLSWETY
SEDISALDDSSSIRSFGLLEQINVTRDTSDYLWYITSVDIGSTESFLHGGELPTLIVETTGHAMHVFINGQLSGSAFGTRKNRRFVFKGK
VNLRAGSNRIALLSVAVGLPNIGGHFETWSTGVLGPVAIQGLDHGKWDLSWAKWTYQVGLKGEAMNLVSTNGISAVDWMQGSLIAQKQQP
LTWHKAYFNTPEGDEPLALDMSSMGKGQVWINGQSIGRYWTAYATGDCNGCQYSGVFRPPKCQLGCGEPTQKWYHVPRSWLKPTQNLLVL
FEELGGDPTRISLVKRSVTNVCSNVAEYHPNIKNWQIENYGKTEEFHLPKVRIHCAPGQSISSIKFASFGTPLGTCGSFKQGTCHAPDSH
AVVEKKCLGRQTCAVTISNSNFGEDPCPNVLKRLSVEAHCTPTQN

SignalP predicts secretion with a score of 0.745

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101518	Glycoside hydrolase family 35 - Molecular Function: beta-galactosidase activity (GO:0004565) - Biological Process: carbohydrate metabolism (GO:0005975) - Cellular Component: beta-galactosidase complex (GO:0009341)	90
2	118505	Galactose-binding like Glycoside hydrolase family 35 - Molecular Function: beta-galactosidase activity (GO:0004565) - Biological Process: carbohydrate metabolism (GO:0005975) - Cellular Component: beta-galactosidase complex (GO:0009341)	76
5	128994	Galactose-binding like Glycoside hydrolase family 35 - Molecular Function: beta-galactosidase activity (GO:0004565) - Biological Process: carbohydrate metabolism (GO:0005975) - Cellular Component: beta-galactosidase complex (GO:0009341)	74

Preceding Unigenes (3)

Unigene	Build
SGN-U215503	Lycopersicon Combined #3
SGN-U218342	Lycopersicon Combined #3
SGN-U224648	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Event Web URL: