Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580654 in the current build, Tomato 200607 #2

Unigene SGN-U315068

Unigene Basic Information

Unigene ID:	SGN-U315068
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315068
mRNA sequence:	Length: 2759 bp

>SGN-U315068 Tomato 200607 #1 (41 members)
TTTGCCGACCTCTCTTTCCTACCTTTTTCGCTGAAAAATATTTAATTTTATTTATTTTCTTTCTTTTCGCCCAAGTAACTTACAATATTC
AAAGTGTTGAATTTTTCTCACAAACTATAAATGTTATCTTTATTATTAATTATAATAATAATAATTTAGCTGATGAATTTCACAAGCTAT
TCAGTGAATTCCATCTCCGTATCAACGCCGTCGTCTCGAGATCTCCGTTGCTTTGTTTGATCGTTTGCTTCTCAGTTATCTCTGTATCCT
TCGTTCTTTCTTCGAGACGACGACAAAGATAAAGACGACGGCGTTTGATCTATGAAAGAGGAGGTGAATTAAATTAGCGCGTAAGTTACC
TTTGTACAAAGGGAAATTTGTTGACTTGACATCAACATTATGGAGAGAACGTGCTTCTACCGAGATGGCCACTCATTGCAGAATTTGGTT
TTGCATTTCGTTCTCCATGATGCGGCTTCTCAGAAATTTGTTATGACAGACCTGTGCTATACTAGTTTAGGATTTAGTCTTTCTGTTAGA
AATTTGTAAATAGTAGTTGCCTGTAGATAAATGGAGTCAAACTGGGTTGAAGTGTTAGATAATGACCGTAGGACAGCTGACGTCGACTCA
AAAAGTAAAGTAGCGTCTCAGTACGTGGCACGTATAGTTGGAGCTGGCACTGAGAAGCTGGAGGAGCTATCATTTCAACCAAATTGTAGC
TCATTTTATAGCACGCTTGGTAAGAGGAAGAGGACTGTGGAAGGTGAAACTAATTGCAGATCACATCTCAGGAAATCGACAGTTAAGAAC
TACTCAAATTTCATTAAAAGTGGACTGCCACAACGTGTTTTATATCATCAGAATGGTGAATGGAATGATTTCCCTCAAGATATTGTTCGT
ATTGTCAAAGAAGATTTCCGTGCAAAGAAGGCTGTGATTGAGGTGAACTTTGGTGGCTTTCATGTAATACTTGATATTCTATATATGGTT
CAGGTAAATTTGGTTACCGGATTGGAGAAACCTATTGCCTGGATAGACGAAGCAGGTGGCTGTTTCTTCCCTGATTTATGTCTCGTTAGT
TGTAAAGCGCACGACAACATTGAGATACAATCGCAGAGAACTGAAGGATTCAGTGCTGCTGAGCCAGATAGGGCTACTAATATCAAGTTG
CATCTTGAAATAGATATTAATGGACCGAACAATTGCAAATTGGATGAAGGTATGGAAGAGTCAAATGTCCGTGTTAAAAGGATTAAAGTC
GATCCTTTAAAAGATAATCAACAATTTGCTGTTGATCAAAAATCATATCCTAAAATGGAAGTAGTGGCAGAAAATCAACAGGATCAGGAA
AGTCTGTCTCCTATATTAGAAGATACACTTAAGTTGGTGGATGCAGAATCGGTTAAAACTATGTTTGTTAAGGGAATGAATACCATCTAT
ATGGTGGATATAGTCAAAATTAGTCAATGCTCAAGTAAATATATGAGAAATCGCTTGGAACTGTTTGAGAAGCAGGCTGAGATAACTCAA
AAGTATCGTGGGAAATCCAATGTTCGGCATGCTTGGCTTGCCGCTTCCAAAGAGGTAGTATCTACAATTATGAACTATGGGCTTATGCAT
GGGGCCTGTGGACAGAAGACTAAGCTTGGTGTTGGAGTGCACCTCATTGCCCAGGACTGTGCCTCTAAAAGTGCCGCTAGCTGTGATATT
GACGAAAATGGCATCCGTTACATGGTTCTTTGTCGTGTCATTTTGGGCAATGAAGAACTTTTGCATTTTGGCTCTCATCAATCTTATCCA
AGCAATGAGAGATATGATAGTGGTGTTGATGATCTCGAGAGTCCTACTCACTATACTGTTTGGAACATGAATATGAATACACACATATAT
CCTGAATATGTCGTGAGCTTCAGGATGTCTTCAGGAGCAGAAGGGGCTCCAATAAAGGAAGAAAGTCGGCTTGATGTCTCCAGAGTTACT
TCTCAGGGATCTGAGGAGCGATTGGACTTGAATAAATTGCCTACAGAATTGGGGAACTGTCAGCAATATCAATTTGTAAGAAACATACAG
CAATCCCATGGTGTTGGTGTGGGTACCAATAAATCACCTAAATCCCCCTGGATGCCTTTCTCTATGTTATTCGGAGCTATTTCAGCTAAA
GTGTCTCCAAAAGATTTGAAATTGGTTCATGCACATTATGACTTGTTCAGGAGCAAAAAAATTTCCCGGAATGATTTCATTAGAAGGCTG
AGGTTGATAGTGGGTGATCAGTTATTGAAGTCTACCATAACCAATCTCCAGTGTAAGCCGCCTTCCGCATCTCCATGCTTTCTGAATGTG
CCGAGTGGGGAGAGTAATTGTTGAGGCTGTACCAGCAAGGGTGGATCGCTGCGTGGTGGCGAAGAGTCCACTTTTACCAATCAAGCGTCG
TCCTCTTCTCTCTATCTCTCTTTGTTTTTGGTGTTATGTAGCTTTAGTTTCTTTGAACATTTTGTGATTATATGCAGTTATGTCTAGACT
TGCACCTTCTGTTCTTCTATATATGCGACTTCCAATTCTCTCACGTCTGTGATGGCAATAATTGGTGCACAGAAAAAAGTTACTGGAGCT
TAAATTGGTTTTAGGTTGGCATCTTGAAAGTGCTGCTAGTCGGTTTAATCATGGTTTGAAGAGAATAAAACTGTAGCAAACATCGGTGGC
GTTGTATTTTAACAAAAACTTAGGCATTGTACTGTTATCACTTTGAAGCTGAGGGGTGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	8
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	7
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSB	seed	1880	3
Solanum lycopersicum	cTSD	seed	1504	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (41)

Alignment image suppressed for unigene with 41 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101907	PARP catalytic - Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950) - Cellular Component: nucleus (GO:0005634)	29
2	119028	PARP catalytic - Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950) - Cellular Component: nucleus (GO:0005634)	22
5	130114	WWE PARP catalytic - Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950) - Cellular Component: nucleus (GO:0005634) Poly(ADP-ribose) polymerase catalytic region - Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950) - Biological Process: protein amino acid ADP-ribosylation (GO:0006471)	12

Preceding Unigenes (1)

Unigene	Build
SGN-U214423	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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