Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578117 in the current build, Tomato 200607 #2

Unigene SGN-U315143

Unigene Basic Information

Unigene ID:	SGN-U315143
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315143
mRNA sequence:	Length: 989 bp

>SGN-U315143 Tomato 200607 #1 (45 members)
GGGCGATTGGCGGCCAATCGGCCGAATTCCCATGGGGATCGGCCGAATTGATCCCAAAGCAAAATCTCAGTATTTTAAGGCGATTTTCTT
CGATTCTAAGACAAACCCAGTTCAATTCTGTGTTTAATCTTCCTGTTTCGTCTTTCTCTAAGCCGATCCGAACAGTTTTACCCAATTCTT
TGGTTACCTCTAAGGGTTTTGAGTTGTGGGGTTTAAGATCAGATCATACCATGGCTAGTCAATCAAGCAACCCTCAATCTGTTTATGATT
TCACTGTCAAGGATGCTAAGGGCAAGGACGTTGATCTCAGTATTTACAAGGGAAAAGTCCTTATCATTGTCAATGTTGCATCACAGTGTG
GCCTGACTAATTCGAACTACACTGACATGACGGAGTTATACAAGAAGTACAAGGATCAAGGTTTGGAGATTCTGGCCTTCCCTTGCAACC
AGTTTGGTGGACAGGAGCCTGGAAACATTGAAGATATCCAGCAAATGGTCTGCACTCGCTTCAAGGCTGAGTACCCCATATTTGACAAGG
TTGACGTGAATGGTGATAATGCTGCTCCATTATATAGGTTTCTGAAATCAAGCAAAGGTGGGTTCTTTGGAGATGGTATCAAGTGGAACT
TCTCCAAATTCCTCATTGACAAAGAAGGACATGTCGTTGATCGCTACTCTCCAACCACTTCTCCAGCTAGCATGGAGAAGGATATCAAGA
AACTCTTGGGTGTTGCTTAAGCTCTAGAGTCTGGACTCGGCGGTGCTGTCTCTGCATTTTGTGCTAGAAATAATGAACATATCATTGCGA
ATAAGCTATGTTTGATGTAATTTTCTTCTTGTTTTAGTTCCTACAGATGTTTGCTACTTTGTACAATTTCAATATACTGATCAATATTTC
TATTTACAAGTATTAACAAGTTTTTTCCAACTTTTGGTAAAAAGATTGCTAGTAAAGATAAATAACACTTCATCATTTCAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
gpxle1	glutathione peroxidase like encoding 1	glutathione peroxidase

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	10
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	6
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (45)

Alignment image suppressed for unigene with 45 aligned sequences.
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Markers Information (0)

Expression Data (3)

Annotations (manual: 4 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101728	Thioredoxin-like fold Thioredoxin fold Glutathione peroxidase - Molecular Function: glutathione peroxidase activity (GO:0004602) - Biological Process: response to oxidative stress (GO:0006979)	43
2	118635	Glutathione peroxidase - Molecular Function: glutathione peroxidase activity (GO:0004602) - Biological Process: response to oxidative stress (GO:0006979) Thioredoxin fold Thioredoxin-like fold	41
5	129121	Glutathione peroxidase - Molecular Function: glutathione peroxidase activity (GO:0004602) - Biological Process: response to oxidative stress (GO:0006979) Thioredoxin fold Thioredoxin-like fold	39

Preceding Unigenes (1)

Unigene	Build
SGN-U214733	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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