Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581535 in the current build, Tomato 200607 #2

Unigene SGN-U315161

Unigene Basic Information

Unigene ID:	SGN-U315161
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315161
mRNA sequence:	Length: 1187 bp

>SGN-U315161 Tomato 200607 #1 (41 members)
TTAAAACCTCTTTCTCCTACCTGGGGAGATCCTTCCACTTCCCAATAACGATACAGTTTTTTAATTTATCATTTGCCAAAAACAAAGAAT
TACTAAACATAAATATCCATTTCCATTACACAATATACATATATATACACACACAAAGAAGAAAGAAGAAAGAAGAAATTAATATGGGTA
GAGGAAGAGTACAATTGAAGAGAATTGAGAACAAAATTAATCGTCAAGTTACTTTTTCAAAGAGGCGATCTGGTTTGCTTAAAAAAGCTC
ATGAGATCTCTGTGCTTTGCGATGCTGAAGTTGGACTCATTGTTTTCTCAACTAAAGGAAAACTCTTTGAGTATTCTACTGACTCTTGCA
TGGAAAGGATTCTTGAAAGGTATGAAAGGTACTCATATGCTGAAAGGCAGCTTAATGCTACTGATATTATAACCCCGGGTAGCTGGACTT
TGGAACATGCTAAGCTTAAGGCCAGACTTGAGGTTTTGCAAAGAAACCAAAAGCATTATGCAGGAGAAGAGTTGGACACATTGAGTATGA
AAGAGCTTCAGAATCTGGAACACCAGCTCGATTCTGCTCTTAAGCACATTCGATCTAGAAAGAACCAATTGATGCATGAATCCATTTCTG
AGCTTCAAAAGAAGGACAAGGCATTGCAAGAACAAAACAACAATCTTTCAAAGCAGGTTAAGGAAAGGGAGAAAGAGATGGCCCAACAGA
CTCCGTGGGAGCAACAGAGTCATGATCATCTCAATTCATCTTCGTTTGTTTTGCCACACCCCTTTAACAATCTTCACATAGGGGAAGCAT
ACCCAAATGCAGGAGACAATGGAGAAGTAGAAGGATCATCGCGGCAACAACAACAAAACAGTGCTTCTGTGATGCCTCCATGGATGCTTC
GCCATCTCAACGGTTAAATTAAAACTTAATGAAGTATAAAGCAAGCGGACAATATTATGTTATCTATTAATCACTAATAGTATATGCACA
TATATTATATATATGTATGTTACATATTAGACAAACACAACTTTCATATCTACTTAATTGTGTATGGTGTATATATGGCTGTTGTGTAAC
AATATGCACAATATATTGTAGTAGTACCATATATCATCCTCTCTTTGGATGTTTTGTCTTAAAACATTTTACCACTAGCACTAATATTTA
TTGCTCATAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
fruitfull2	FRUITFULL-like MADS-box 2

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	7
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (41)

Alignment image suppressed for unigene with 41 aligned sequences.
[Show Image]

Markers Information (1)

Expression Data (3)

Annotations (manual: 3 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101412	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	242
2	118437	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	170
5	128950	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	149

Preceding Unigenes (1)

Unigene	Build
SGN-U214549	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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