Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U563958, SGN-U563959, and SGN-U563960 in the current build, Tomato 200607 #2

Unigene SGN-U315267

Unigene Basic Information

Unigene ID:	SGN-U315267
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315267
mRNA sequence:	Length: 1595 bp

>SGN-U315267 Tomato 200607 #1 (32 members)
GCACGAGGTCATCTTATCTCTACAAAGTTATCTCCTTTGTCAACTACTTCCAAAATTTCCTTTTTATCTTATCCTTTCGCCCGAAACCCA
CTTTCAAATGCAAAGCAATTTCATCTAAATCCCATTGCAAATCATGTCTTGTATTTACAGTTCAGTCTCTTCTTTCTCAATTTCATCTAA
ATCGTCTTCTTCTTCTCGCTCTAAATTCAAGCCCAGAATCTCTTGTTCCGTTGGAGGAACTGTTGCTGAACCAAAAACTATAAATGCAAC
AGAGCCTTTGTTGCTTGATGCTGTTCGGGGTAAAGAAGTAGAAAGGCCTCCTGTTTGGCTTATGAGACAAGCAGGGAGGTACATGAAGAG
TTATCAAATCTTATGTGAGAAGCACCCATCCTTTCGTGAGAGATCAGAAAATGTAGATCTTGTGGTAGAAATTTCTCTGCAGCCATGGAA
AGTATTCCAGCCTGATGGGGTCATTTTGTTTTCAGATATTCTTACTCCTCTCTCTGGTATGAACATCCCTTTTGACATTATAAAGGGGAA
GGGTCCTGTCATATTTGATCCACCGACCACACTTTCTGATGTTGAGAAAGTTAGAGAATTTATTCCTGAAGAATCAGTTCCATATGTTGG
AGAAGCATTAACAATTTTGCGGAAAGAGGTAAATAATCAAGCAGCAGTTCTGGGTTTCGTTGGGGCACCATTTACGTTGGCTTCATATGT
GGTTGAAGGTGGTTCCTCTAAGAACTTTACAAAAATTAAGAGATTAGCTTTTGCGGAGCCCAAGGTCCTTCATTCGCTGCTTCAAATATT
TGCAACCTCAATGGCTAAATATATCCGTTATCAAGCTGACCATGGAGCTCAAGCAGTTCAGATCTTTGATTCATGGGCCACAGAGCTAAG
CCCAGTCGATTTTGAGGAGTTCAGTCTACCATACTTAAAACAGATAGTTGAGGCAGTGAAACTAACCCATCCTGATCTCCCTCTGATTCT
TTATGCAAGTGGATCAGGTGGCTTGCTTGAGAGACTACCCTTGACAGGAGTAGATGTAGTCAGTTTGGACTGGACAGTTGATATGGCTGA
TGGTAGGAGACGACTGGGTCCTAATGTGGCTATACAAGGTAATGTGGATCCTGGAGTTCTCTTTGGCTCCAAGGAATTTATTACCAACCG
GATAAATGATACAGTGAAGAAAGCTGGTAAAGGGAAACATATTTTGAACCTTGGACATGGCATCAAAGTAGGTACACCTGAGGAAAATGT
TGCTCACTTCTTTGAGGTTGCTAAAGGTCTTAGGTATTAGAAGCAGATCAAATCATTATCAATTACAACCTGTTCCATATCTCCGACAAG
GTCTTATCATTCTTCTCCTCATTTTTTCTCTTGTATCTAGTGGTTCCTGTGAGTGAACAGGGAAACAAATATTTTCAGAGCATTTTTGTT
AGAATGTGCTTTAAGATCTAATTTGAGACTGAAGTTGAAGCTAGGCTTTCTCATTGTGTATCTGAGTGTAGATTTTTGACTGATAGTAGT
CTAGTTCGACTCTGATAAACTTTGAAAGTTGAACTCACTGAACTTTTCGTTTGTTGGGTGCTGCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	1

mRNA member sequences (32)

Alignment image suppressed for unigene with 32 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102530	Uroporphyrinogen decarboxylase HemE - Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853) - Biological Process: porphyrin biosynthesis (GO:0006779) Uroporphyrinogen decarboxylase (URO-D) - Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853) - Biological Process: porphyrin biosynthesis (GO:0006779)	13
2	119712	Uroporphyrinogen decarboxylase HemE - Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853) - Biological Process: porphyrin biosynthesis (GO:0006779) Uroporphyrinogen decarboxylase (URO-D) - Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853) - Biological Process: porphyrin biosynthesis (GO:0006779)	13
5	130967	Uroporphyrinogen decarboxylase HemE - Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853) - Biological Process: porphyrin biosynthesis (GO:0006779) Uroporphyrinogen decarboxylase (URO-D) - Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853) - Biological Process: porphyrin biosynthesis (GO:0006779)	8

Preceding Unigenes (1)

Unigene	Build
SGN-U215034	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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