Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U574822 and SGN-U574823 in the current build, Tomato 200607 #2

Unigene SGN-U315279

Unigene Basic Information

Unigene ID:	SGN-U315279
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315279
mRNA sequence:	Length: 1297 bp

>SGN-U315279 Tomato 200607 #1 (41 members)
CTCTCTTTCGGTTCTGGGCTAAAACCCTTTTTCCCCAAATTTCATAACCCTCATCCAGATCTCAATTTTCATACCATTTGTTGTACAAAT
TATGTCAAATCTTGATGTATCTCTCGATGATTTGATCAAAAGGAACAAAAGTTCCAGTAGTCGGAACCCTAGACCCAGAACAACCGGATT
CGGCTCTGGTCCAGGTCCAAGGCGTCGCTTCCCTAACCGTGCCACCAACAGGCCGGCGCCATATTCCGTCCATGCACCGGAGTCTACTTG
GGACCATGATATGTTTGCGGATCATAACCCGTCGTCTGTCCGAAGACCTGGGGTGTCCGGTATTGGGACCGGGATCAAGCTCCTCATTTC
CAATTTGGATTATGCGGTTTCAAATGAAGATATCAAGGAGCTTTTCTTAGAAGCTGGTGATATAAAGCGTTACTCAATTCATTATGACAA
GAGTGGAAGATCAAAGGGAACTGCAGAAGTAATCTTTTCACGGCGAAGGGATGCAGAGGCAGCCATTAAGAGATATAACAATGTTCAGCT
GGATGGGAAGCCCATGAAAATTGAGCTTGCTGGAACAAATATTGCTCCTCCAGCTCTTCCTCCCATTCGAAATCGTTTATATGGAAATCC
AAATCCTGCTACAAGAAGTCAACAAAGAGGTGGTGGATTTAGCCGTCCTCGAGGTGGTGGTGGTAGAGGGAGCATGAGAAAGGATGGTGG
AAGGGGCAGAGGCCGTGGTCAGAACGTTTCTGCAGAAGATCTTGATGCTGAATTGGAGAAGTATCATGCAGAAGCCATGCAGACAAACTA
ACATTCAGACATGCTTGATGAGATACTTGTGTAGTAACATGTGCAAGCATCCACAGGATCAAAGGTTATTCTTATCAGGAATTGGTACAA
ACGATTCTTGATTAAGTCTGATACAGATTCTGGGAAAACACTGAAAGGTGCAGAGCCTATGTACTGCTAGAAAATCATAAAACTTGTATT
TCAAAGAGTGTGCTTGGTATTTTCTCCACATTTGATGGTGTACAACTCTTGCCTTGTAGCTTTCCCTTGTGTTTATCTTTATGTAAAACT
AATCGAGGAGAAATTCCTTACTTTCACAAAAAAAAAAAAAAAGTAGTTGTGAAATTATGGTAGTTGTTGGTTCAACCAAGTCTGGTTGAA
CGCCTCGCAAGGTTAGTGAAACCTTGTAACTTTTGCAGCTGCTGGACAAGTCCTAGTCATCTACTATGTGAAAGTGGTATCTGCAGAAAT
TTAAATATTCATTTCCAACGAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	10
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (41)

Alignment image suppressed for unigene with 41 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	119325	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	17
5	130771	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	9

Preceding Unigenes (1)

Unigene	Build
SGN-U215509	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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