Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579695 in the current build, Tomato 200607 #2

Unigene SGN-U315730

Unigene Basic Information

Unigene ID:	SGN-U315730
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315730
mRNA sequence:	Length: 2249 bp

>SGN-U315730 Tomato 200607 #1 (32 members)
TGGCGGCCAATCGGCCGAATTCCATGGGGATCCGATGACCACCAAGCTGCTTCTACTATAAAAAAGCTGCAATTTTTTTTCAAGATTCTT
GCCAAATCTTCAATCTCGAACACAATTTTTCACTAATCCAACACCCCCATTTTCAATTTTTCAAGAAAATGAAGGTAATTGAGAAGATTC
AAGAAGCAGCCAAGACTGACAAAGTGATATTTTCGTTCGAATTTTTCCCACCAAAGACTGATGATGGGGTTGAAAATCTGTTTGAAAGAA
TGGAAAGAATGGTTGCTCATGGTCCATCTTTTTGTGATATAACATGGGGTGCTGGTGGTTCAACAGCAGATCTGACACTTGAGATTGTTA
ATAGGATGCAGAATATGGTGTGTGTTGAATCTATGATGCATTTGACATGTACAAATATGCCTGTTGAAAAAATTGATCATGCTCTTGATA
CTATCAAGGCTAATGGTATTCAAAATGTTCTTGCTCTTCGTGGAGATCCTCCTCATGGTCAGGATAAGTTTGTTCAGGTTGAAGGTGGAT
TTGCTTGTGCTTTGGATCTGGTGAAGCATATGCGTGCCAAGTATGGGGATTACTTTGGGATAACTGTTGCAGGTTATCCAGAGGCACATC
CTGATGTTATACCTGCTAATGGAATAGCTACCAAAGAGATTTATGAAAATGACCTTGCTTACCTTAAAAAAAAGGTTGATGCTGGAGCTG
ATGTTATTGTAACTCAACTCTTCTACGATACTGATATTTTCCTAAAATTTGTCAATGATTGCCGCCAAATTGGAATTAACTGCCCCATCG
TTCCGGGTATCATGCCCATTAACAATTACAAGGGCTTCTTGCGCATGACTGGATTTTGCAAGACTAAGATTCCGGATGAGATAATGGCTG
CATTGGAACCTATTAAGGACAATGAAGAGGCTGTCAAAGCCTATGGAATTCACCTTGGAACTGAGATGTGCAAAAAGATTTTAGCCACTG
GCATCAAGACCTTGCATCTTTATACATTGAACATGGAGAAATCAGCATTGGCCATTTTGATGAATCTTGGATTAATCGAAGAGTCCAAAA
TTTCTAGGCCATTGCCTTGGAGACGTCCTGCAAATATTTTCCGTGTCAAGGAGGATGTGCGTCCTATATTTTGGGCGAATCGTCCAAAGA
GCTACATTTCAAGGACCACAGGTTGGGATGAATACCCACATGGTAGATGGAGCAATGCTCAAAATCCATCATACGGAGCACTTACCGACT
ATCAGTTCATGCGTGCACGCTCAAGAGATAAGAAGCTTCAAGAGGAATGGGCTGCGGCTTTGAATAGCGTGGAAGATATCTACGAGAAAT
TCAAGGACTACTGTCTTGGAAAGCTGAGAAGCTGCCCATGGTCTGAGTTAGATGGTCTTCAGCCAGAGACAAAGATCATAAACGAAAAGT
TGGGTCAGGTCAACACGAAAGGCTTCCTGACTATTAACAGCCAACCAGCAGTTAATGCTGAGAAGTCCGACTCTCCTTCTGTTGGATGGG
GTGGCCCCGGCGGATATGTTTATCAAAAGGCATACTTGGAGTTCTTCTGCTCTCAGGAGAAGTTGAACGCCCTCGTTGAGAAATGCAAGT
CTTTCCCTTACCTAACTTACATGGCTGTAAACAAGGAAGGAAACTGGATCTCCAACGTCAACCAAACCGACATCAACGCTGTGACATGGG
GAGTTTTCCCAGCTAAGGAAATTATACAACCAACTGTCGTTGATCCCGCCAGCTTCATGATATGGAAGGATGAGGCATTTGAAATCTGGT
CAAGAGGATGGGCTCAATTATACCCAGAGACTGATCCATCAAGAAAATTGCTTGAACAAGTTCAGAACAGTTACTTCTTGGTCAGCCTCG
TCGATAATGACTACATCAATGGTGATTTGTTTTCCATCTTCAAGGATATCTGAAACTAACCAAGAAAACTCAGTTTCTCAACTTTTTTTA
GTCCCATTTTATTCCAAGAGTTTTTACTGGATGTTGTTACTATTATTATTGTTATTATTGTTGTTGTTCTAAGTTCTTATAATAGGAATA
ATTTAAAGGGTTTTGTTCCCTTCAATTTATTCTTTTCCTCTTCAAATTTGAGGTACTTTGCCTTTTAAGGCTTCAATTTTTACAAATTTA
TAAGCAATTATCCTTCCCCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCAGACTAGTTCTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	5
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	3

mRNA member sequences (32)

Alignment image suppressed for unigene with 32 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 2 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102605	Methylenetetrahydrofolate reductase - Molecular Function: methylenetetrahydrofolate reductase (NADPH) activity (GO:0004489) - Biological Process: methionine metabolism (GO:0006555) Eukaryotic-type methylenetetrahydrofolate reductase - Molecular Function: methylenetetrahydrofolate reductase (NADPH) activity (GO:0004489) - Biological Process: methionine metabolism (GO:0006555)	12
2	120010	Eukaryotic-type methylenetetrahydrofolate reductase - Molecular Function: methylenetetrahydrofolate reductase (NADPH) activity (GO:0004489) - Biological Process: methionine metabolism (GO:0006555) Methylenetetrahydrofolate reductase - Molecular Function: methylenetetrahydrofolate reductase (NADPH) activity (GO:0004489) - Biological Process: methionine metabolism (GO:0006555)	11
5	130301	Eukaryotic-type methylenetetrahydrofolate reductase - Molecular Function: methylenetetrahydrofolate reductase (NADPH) activity (GO:0004489) - Biological Process: methionine metabolism (GO:0006555) Methylenetetrahydrofolate reductase - Molecular Function: methylenetetrahydrofolate reductase (NADPH) activity (GO:0004489) - Biological Process: methionine metabolism (GO:0006555)	11

Preceding Unigenes (1)

Unigene	Build
SGN-U215011	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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