Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U563705 in the current build, Tomato 200607 #2

Unigene SGN-U315756

Unigene Basic Information

Unigene ID:	SGN-U315756
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315756
mRNA sequence:	Length: 2669 bp

>SGN-U315756 Tomato 200607 #1 (35 members)
GCCTTTATATTCTCTTTACCAGTGGCGGCCGTTGGTTTAGTGTCCTCTCTCTTTTACGTAGTATTAATCCATCATTTTCCCTTAGCTGCT
GAGGTAATTGTAGCGGCGGCGAACGATGGAGCTGAAACTATCATTCCCTGCGGATTCTCCGCCTTTGGCTGTCATTGCGGCGGCGAAGAT
CGCCGGAGTTCCAATCTCTACTGATCCAACTCTTACTACCGGTTCTACTCCTATTATGCATATAGATAATGGACTGAAGCTGCGGGGAAA
TTTTGTTCTTCTGAGGTACATTAGTCGGGTTGCTAATATACCCGATCTGTACCAGCGTGATGCCTGTGAGTCTAGCCAGATAGATGAATG
GCTAGAGTATGCTCCTATATTTGCCTCTGGCTCTCAATTTGAGGAAGCATGTGGCTACGTGGATGGATATCTTCTGCAGCACACATTTCT
TGTTGGACATAGCCTCTCAATTGCAGATATTGCAGTTTGGTCTGGCCTTGCAGGTACTGGGAAGAGATGGGAAAGCCTACGATCATCTAA
GAAGTACCAAAATCTGGCAAGGTGGTTCAACTCAATATTAACTGAATATGGTGTTCTAAATGAAGTCACAGCAACATATGTGGGAAAGAA
AGGCCCGGGAAAGCCAACTGCATCCAAAGTGAAAGAGCAACAAGGCTCAAATGCTAATCTGGCCAAAGTAAATGGTGATGCCGCTGACAA
GGAAAAAGAAGGTAGGAAACCGACATCTGAGGTAGATCTTCCTGAGGCAGAAGTTGGAAAAGTGCGGTTGAGGTTTGCACCAGAACCCAG
TGGTTATCTCCATATTGGTCACTCAAAAGCAGCATTACTGAACCAGTATTTTGCTGAAAGATATCAAGGGGAAGTTATTATTCGATTTGA
TGATACAAATCCTGATAAGGAAAGCAATGAATTTGTGGATAATCTACTGAAAGATATTGAAACTCTTGGAATTAAGTATAGGACTGTGAC
ATATACATCTGATTACTTTCCACAATTAATGGAGATGGCAGAGAAATTGATTCGTGAGGGTAAAGCCTATGTGGATGATACCCCAAGGGA
GCAAATGCAAAAAGAAAGAATGGATGGAATAGAATCAAGGTGTAGGAACAATAGTGTTGAGGAGAATTTGAAATTATGGAAGGAGATGAT
TGCTGGTTCAGAGAGGGGAACAATGTGTTGTGTTAGAGGGAAATTGGATATGCAGGATCCTAACAAGTCAGTTAGGGACCCAGTATATTA
CCGTTGCAATCAGACTCCTCACCACAGGATTGGTGCTAAATATAAAGTATACCCTACTTATGACTTTGCATGCCCATTTGTAGATGCTTT
TGAGGGTATTACACATGCACTTCGATCTAGTGAATATCATGATAGGAATGATCAGTATTACTGGATTCAAACTGATATGGGTTTCAGTAA
AGTACATATTTATGAATTTAGTCGGCTGAATTTGGTCTATACACTTCTTAGCAAGCGTAAGTTGCTGTGGTTTGTGCAAAATGGACTGGT
CGAAGGGTGGGATGATCCTCGTTTTCCGACTGTACAAGGAATTGTGCGCAGAGGGCTGAAGATTGAGGCGCTGATACAGTTCATTCTTGA
ACAAGGAGCATCAAAGAATCTCAATCTTATGGAGTGGGACAAGCTATGGGCCACTAATAAGAAGATCGTTGATCCTGTATGTCCTAGGCA
TACCGCTGTTATTGAAGAAAGACGAGTCTTATTGACTTTGAGTAATGGACCAGATGATCCTTTTGTCCGAATTGTACCCAAGCATAAAAA
GTATGCAGGTGCTGGGGAAAAAGCAACAACTTACACCAAGAGAATCTGGATAGACTATGATGATGCTGTATCAATCTCTGTCAACGAGGA
AGTAACATTGATGGACTGGGGCAATGCAATAGTGAAAGAGATACGGAAGGACCAAGAGGGTAATGTTACTCATCTGTCTGGGATTCTGCA
TCTTGAAGGGTCAGTTAAAACAACAAAGTTAAAGCTGACTTGGCTGCCAGAGAGTGATGAACTTGTTAAACTCTCTGTGGTTGATTTTGA
CTATTTAATTACAAAGAAGAAGCTCGAGGAAGACGAGAACTTTGTCGATGTTGTTAATCCTTGCACAAGGAAGGAGACTCCAGCGCTTGG
TGATTCTAACATGAGGAATCTGCAACGTGGAGACGTGTTGCAGCTGGAGAGGAAGGGCTACTTCAGATGCGATGTTCCCTTCCTACGACC
TCAAAAACGCATTGTTCTTTTTGCCATCCCTGATGGTAAACAGCAACCAGTGTTGCGGTTTGCAGTCCCAGATGGCAAAACAAAATGAAG
ACATATCAGATTGCAACCAGTATTCATGCTTGAAGAAGAATCACAGGGTGTGATCTGATTGTCTCCTTTTTTGAAACCTAAGTTAGGGCG
AAATGTGCAAGACCATTCGTTTTTCCAAGATCATTAGGTGTAATTTCCTATTTGGAGTATTATTCTACTATTCGACTGTAATATTTTCTT
AAAACACTTAAAAACAAATACTCAAATGTTCAAAAAAAAATGTATTAACATATCACTGATATTTCATAAGTGGAGTTTTGAAAGGTTGTT
TTCCGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	12
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTSB	seed	1880	1

mRNA member sequences (35)

Alignment image suppressed for unigene with 35 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101742	Ribosomal protein L35Ae - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Glutamyl-tRNA synthetase class Ic - Molecular Function: glutamate-tRNA ligase activity (GO:0004818) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glutamyl-tRNA aminoacylation (GO:0006424)	41
2	118818	Ribosomal protein L35Ae - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	28
5	132089	Glutamyl-tRNA synthetase archae/euk cytosolic - Molecular Function: glutamate-tRNA ligase activity (GO:0004818) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: glutamyl-tRNA aminoacylation (GO:0006424) Aminoacyl-tRNA synthetase class I - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Ribosomal protein L25-like Glutamyl-tRNA synthetase class Ic - Molecular Function: glutamate-tRNA ligase activity (GO:0004818) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glutamyl-tRNA aminoacylation (GO:0006424) Glutathione S-transferase C-terminal-like	6

Preceding Unigenes (1)

Unigene	Build
SGN-U214583	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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