Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579788 in the current build, Tomato 200607 #2

Unigene SGN-U315933

Unigene Basic Information

Unigene ID:	SGN-U315933
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315933
mRNA sequence:	Length: 1380 bp

>SGN-U315933 Tomato 200607 #1 (33 members)
GATTGGCGGCCAATCGGCCGAATTGACTACTCTGTTCTACAAAACTCTGCAACAACTCAAATACACACAAAAAAAAAATCAATGGCTAAA
GTTAAGATTGGAATTAATGGATTCGGAAGAATTGGCCGATTGGTTGCTCGGGTTGCTCTCCAAAGAAATGATGTTGAACTCGTCGCAGTG
AACGATCCCTTCATTTCAGTTGATTACATGACATATATGTTTAAGTATGATAGTGTACACGGCCAGTGGAAGCATCATGAGCTCAAGGTT
AAAGATGAGAAGACTCTTCTCTTTGGTGAGAAGGCTGTTACTGTTTTTGGGTTTAGGAACCCAGAGGAAATTCCATGGGCACAGACTGGA
GCTGATTACATTGTGGAGTCGACCGGTGTTTTCACTGATAAGGACAAAGCTGCAGCTCATTTGAAGGGTGGCGCCAAGAAAGTTATCATT
TCTGCCCCTAGTAAGGATGCTCCTATGTTTGTTGTTGGTGTCAATGAGAAGGAATACAAGCCAGAGCTCAATATCGTTTCAAATGCTAGC
TGTACCACAAATTGCCTTGCTCCCTTGGCCAAGGTTATAAATGACAGATTTGGAATTGTTGAAGGTCTTATGACCACAGTCCACTCCATC
ACAGCCACTCAGAAGACTGTTGATGGACCATCAGCCAAGGATTGGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCTAGCAGTACT
GGAGCAGCCAAGGCTGTGGGGAAAGTGCTACCAGCATTGAATGGAAAGTTAACTGGAATGGCTTTCCGAGTCCCAACTGTTGATGTGTCC
GTGGTTGACCTCACAGTCAGGTTGGAAAAAGAAGCTACCTATGATGAAATCAAAGCTGCCATCAAGGAGGAATCTGAAGGAAAATTGAAG
GGAATTCTAGGTTACACTGAAGATGATGTTGTTTCCACAGACTTTGTGGGAGACAATAGATCAAGCATATTTGATGCCAAGGCTGGAATT
GCTTTGAGCAAGAATTTTGTCAAGCTTGTTGCATGGTACGACAACGAATGGGGTTACAGTACACGAGTGGTGGACTTGATTATTCACATG
TCATCAGTTCAGTAAATGTGGCAGTTCACTCGTTGGTGGCGCTGCTGGTGATGATCCTGTTCTTCGTGGTTAGATAAAATAGCTTAGAAT
AAAGTGTTCTCTCGGACCACAAACGCGCAGATGTTTGATGTACTTTGGGGCTATACTCTTGTTTAGATGTTCAACTGGATAGTAAACCTG
TTCACTTTCCGAGAATGAGTCTTAGTAACTCTGGTATATGTGTTACTCTTGTTTCGTTCTGTTATGAATGTATAATAACTTTGAACCTTG
TTTAGTAAAAAAAAAAATCCCTGTTTCTAT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
gapdh	glyceraldehyde 3-phosphate dehydrogenase	phosphate dehydrogenase

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	11
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (33)

Alignment image suppressed for unigene with 33 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101545	Glyceraldehyde 3-phosphate dehydrogenase - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity (GO:0004365) - Biological Process: glycolysis (GO:0006096) - Molecular Function: NAD binding (GO:0051287) Glyceraldehyde-3-phosphate dehydrogenase type I - Biological Process: glucose metabolism (GO:0006006) - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) - Molecular Function: NAD binding (GO:0051287)	78
2	118512	Glyceraldehyde 3-phosphate dehydrogenase - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity (GO:0004365) - Biological Process: glycolysis (GO:0006096) - Molecular Function: NAD binding (GO:0051287) Glyceraldehyde-3-phosphate dehydrogenase type I - Biological Process: glucose metabolism (GO:0006006) - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) - Molecular Function: NAD binding (GO:0051287)	71
5	129136	Glyceraldehyde 3-phosphate dehydrogenase - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity (GO:0004365) - Biological Process: glycolysis (GO:0006096) - Molecular Function: NAD binding (GO:0051287) Glyceraldehyde-3-phosphate dehydrogenase type I - Biological Process: glucose metabolism (GO:0006006) - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) - Molecular Function: NAD binding (GO:0051287)	37

Preceding Unigenes (1)

Unigene	Build
SGN-U217037	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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