Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U566806 in the current build, Tomato 200607 #2

Unigene SGN-U315968

Unigene Basic Information

Unigene ID:	SGN-U315968
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315968
mRNA sequence:	Length: 2797 bp

>SGN-U315968 Tomato 200607 #1 (30 members)
AGGCCCTTTCAGTCTCCTTTCTCTCTCTACAATTTTTCAATGGTGTGCTTTATATATATAGAGATTCACTTCTACATATATGTATAGATT
GCAAAAAAATAGTGATTTTGAAGTTTCAATGAAGATGATTATGGTTATTGAAGCGATTAGTGCAAGTAGATTCTGCGATTTCTCTTATTC
GTCTGCTGCTGCTGCTGGTGTGTTCTCAACTTCGAAGGAGTGTTGAAGAAGAAATCTGTTTCGAGGCTTTGTTGTTGTGGATCTGGTTAA
GCAACTATAGCTGTTGGATTTTTGCTTGATTTCTGTTGACTGAAGCATGTGCACTGGCCCAGAAAGACCCAACCAATCTGTTACTGATTC
TACATCTAGTATGAAGGGTATTACTAAACTCACCGTTGAGACTGAAGATTCTTTTTCTAGTTTGCTTGAACTTGCTGCAAACAACGATCT
CGAAGGTTTTAAAAGATCTGTTGAGCTCGATGCTTCTGCTATTGATGAGGTGGGGCTATGGTTGGTTCGCAAGAAAGGTGCAAAGCAGAT
TGTTAATGAGGAGAGGACTCCTTTAATGGTAGCTGCCACTTATGGAAGTTTAGATGTTTTGAAGTTGATTATCTCTAATCCTGTGGTTGA
CGTTAACCGTGCTTGTGGTCCAAACAAGTGGACTGCTCTTCACTGTGCAGCCTCTAGTGGTTCTGTCAATGTTATTGATGCAGTTAAGTT
GCTACTGTCAGCTGGTGGTGATCCTAATGTTGAGGATGCTAATGGCCAGCGGCCAGCTGATGTGATTGTTGTTCCACCAAAGCTTCCTGG
TACTAGAGCTTCTCTTGAAAAACTGCTTCTGAATAATTCATCTGATGGCTCAGTTGGTGACTGCAAATTGACAGTATCTGTGGCTACTTC
AGATGCATCCTCTCCCATTCTCTCCTCATCACCAGAAAATGGATCTCCTTGTTCATCATTGGAGTCCTCGTCTTCCCCTATGGCATCGAA
GTTCAGTGACCTCCCTGCTAATTCTGCACGAGAGAAAAAAGAGTATCCAATAGATCCGTCTCTCCCTGACATCCAGAATAGTATATATTC
AACGGATGAGTTCCGCATGTTCTCTTTTAAGGTTCGGCCATGTTCTAGGGCCTATTCACATGACTGGACAGAGTGCCCATTTGTCCACCC
TGGAGAGAACGCTCGTAGAAGAGATCCAAGGAAGTACCACTATAGCTGTGTGCCTTGTCCTGAATTTCGCAAGGGTGCATGCCGACGCGG
TGATATGTGCGAATATGCTCATGGGGTGTTTGAGTGCTGGCTACACCCTGCTCAGTATCGTACCCGCCTGTGCAAGGATGGTACAAGCTG
TGCTAGACGAATCTGCTTTTTTGCCCATACTACGGAGGAGCTTAGGCCCTTGTATGTCTCTACTGGATCTGCAGTCCCATCTCCTCGGTC
AGCTGCTTCTGCAGCTAGTGTGATGGACATGGCTGCAGCGCTGAACCTTTTTCCTGGTTCACCCTCAGCACACTCTGTGATGTCTCCTTC
TGCATTTAATCAACCCATGTCCCCCACTGCCAATGGAATGTCTCATCCATCTGCACCATGGCCGCAACCAAATGTCCCAACTCTTCATCT
ACCTGGAAGCAATCTGCAGTCTAGCCGTCTGAGGTCTTCCCTTAGTGCACGAGACATTCCGCCTGAGGATTTTAACATGTTGCAGGATTT
TGATGCCCAGCAACTAGTTCTCAATGACATGGCTTGCTATTCACAGCCACGTCCTAATTCTGCCACTTTGAACCGATCTGGTCGGTCCAA
GACACTAACTCCTTCGAATCTTGAAGAGCTTTTTTCTGCTGAGATGAACTCTTCTCCAAGATATTCTGATCAGGCAGCGGCTTGTGGTGT
TTTTTCGCCATCACACAAGTCGGCTTACTTTAATCAGTTCCAACACCAACAGAACATGCTTTCACCAATTAATACTAACGTTTTTTCCCC
GAAAAACATTGAGCACCCTCTTTTGCAGGCTTCTTTTGGTGTTTCCTCACCTGGAAGGATGTCCCCAAGAAGCATGGAGCCTATTTCCCC
TATGAGTGCTCGCCTTTCAGCATTTGCTCATCGTGAGAAGCAACAGCTGCGAAGCCTCAGCTCCCGTGATCTTGGATCCAATAATGCTCC
CCTTGTTGGATCCCCTGTAGGCAACTCTTGGTCGAATTGGGGGTCTCCCAATGAGAAGGTTGACTGGTCTGTGAATGGAAGTGGACTCCG
ACAGCTGCCCAGATCATCTTCTATTGAGCAGCTCAACCCTGGAGAAGAGCCTGACCTATCATGGGTGCAATCTCTTGTGAAGGAATCTCC
AACCGAGATAAAAGAGAAGCAGGCCGCTCCTAATTCAGTTGCTGCACCATCCGGTGAGAGTTTGAAAACCAGTTCCCAAATTGATTCCGT
TGATAATTCCGTTTTAGGAGCTTGGCTTGAGCAGATGCAACTTGATCAGCTTGTCGCCTAGCGAGATAAGACTCTATTAACTCATTTTCG
TGTTTAGCCAAACAAATCAAATTAATAGGAGGGGTAGTATATATTGTTTTTATGGTACATCTTTTTGTTGATGGAGGGGGAAGGAAATTT
GAGGGAGAACAAATGTAGGTGGAACTTTCCATAATGTTTCTATTCGATTCTTCTAATTGTTTATTTGTTTACAAGCAACAGTTTTTAAGT
TGCCTGGGCTATATTAAAGTAAACCCAGTCCAGGTTTATTGAGATCATCTTTGTATTTTTCCATAAAAAAAAAGACTTCTTTTTGGTACT
CCCCAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (30)

Alignment image suppressed for unigene with 30 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (8)

Annotations (manual: 6 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101684	Zinc finger CCCH-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270)	46
2	118602	Zinc finger CCCH-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270)	44
5	129683	Zinc finger CCCH-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270) Ankyrin	17

Preceding Unigenes (1)

Unigene	Build
SGN-U214896	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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